About   Help   FAQ
Tour our new Quick Search
Clec4n Gene Detail
 Symbol
Name
ID
Clec4n
C-type lectin domain family 4, member n
MGI:1861231

Nomenclature History
Synonyms Clecsf10, dectin-2, Nkcl
Genetic Map
Chromosome 6
55.0 cM, cytoband F3
Detailed Genetic Map ± 1 cM
 
Mapping data( 6)

Sequence Map
Chr6:123179861-123197039 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle    (Mammalian Orthology)
Comparative Map (Mouse/Human Clec4n ± 2 cM)
TreeFam: TF333341
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000027044 VEGA Gene Model | MGI Sequence Detail 17179 C57BL/6J ± Kb
transcript NM_020001 RefSeq | MGI Sequence Detail 1227 BALB/c
polypeptide Q9JKF4 UniProt | EBI | MGI Sequence Detail 209 Not Applicable
For the selected sequences
All sequences(24)
Alleles
and
phenotypes 		All alleles(1) : Targeted, other(1)
Polymorphisms RFLP(1) SNPs within 2kb(121 from dbSNP Build 128)   SNPs within 2kb including multiple locations(123)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process immune response
Component integral to membrane, membrane...
Function binding, sugar binding...
External Resources: FuncBase
Expression Literature Summary: (1 records)
Data Summary: Assays (3)    Results (15)    Tissues (13)
Theiler Stages: 20,22,25,26,28
  Assay Type Assays   Results
      Northern blot 3   15
cDNA source data(9)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(11) cDNA(9) Other(2)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000023349
DoTS DT.101380167, DT.110486818, DT.99857747, DT.99857749
Consensus CDS Project CCDS20512.1
UniGene 271782
DFCI TC1587461, TC1596868, TC1603923
NIA Mouse Gene Index U007385
Entrez Gene 56620
VEGA Gene Model OTTMUSG00000027044
International Mouse Knockout Project Status Clec4n
Protein
domains
InterPro ID Description
IPR001304 C-type lectin
IPR002353 Type II antifreeze protein
IPR016186 C-type lectin-like
IPR016187 C-type lectin fold
IPR018378 C-type lectin, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:55818 Fernandes MJ et al., "Characterization of a novel receptor that maps near the natural killer gene complex: demonstration of carbohydrate binding and expression in hematopoietic cells." Cancer Res 1999 Jun 1;59(11):2709-17
(Latest) J:100394 Taylor PR et al., "Dectin-2 is predominantly myeloid restricted and exhibits unique activation-dependent expression on maturing inflammatory monocytes elicited in vivo." Eur J Immunol 2005 Jul;35(7):2163-74
All references(12)
Other
accession IDs 		MGI:1341853
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
Web browser compatibility 		The Jackson Laboratory