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Clec4a2 Gene Detail
 Symbol
Name
ID
Clec4a2
C-type lectin domain family 4, member a2
MGI:1349412

Nomenclature History
Synonyms Clecsf6, DCIR, Dcir1, dendritic cell immunoreceptor
Genetic Map
Chromosome 6
54.0 cM, cytoband F3
Detailed Genetic Map ± 1 cM
 
Mapping data( 3)

Sequence Map
Chr6:123056446-123094017 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Clec4a2 ± 2 cM)
TreeFam: TF333341
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000034576 VEGA Gene Model | MGI Sequence Detail 37572 C57BL/6J ± Kb
transcript NM_001170333 RefSeq | MGI Sequence Detail 2553 C57BL/6
polypeptide Q9QZ15 UniProt | EBI | MGI Sequence Detail 238 Not Applicable
For the selected sequences
All sequences(28)
Alleles
and
phenotypes 		All alleles(2) : Targeted, knock-out(1) Gene trapped(1)
Polymorphisms SNPs within 2kb(165 from dbSNP Build 128)   SNPs within 2kb including multiple locations(167)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process immune response
Component integral to membrane, membrane...
Function binding, sugar binding...
External Resources: FuncBase
Expression cDNA source data(19)
External Resources: GEO  ArrayExpress 
Molecular
reagents 		All nucleic(19) cDNA(19)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000030148
DoTS DT.110486398, DT.40151071, DT.91338260
Consensus CDS Project CCDS20510.1
UniGene 47384
DFCI TC1583809, TC1593336
NIA Mouse Gene Index U007384
Entrez Gene 26888
VEGA Gene Model OTTMUSG00000034576
International Mouse Knockout Project Status Clec4a2
Protein
domains
InterPro ID Description
IPR001304 C-type lectin
IPR016186 C-type lectin-like
IPR016187 C-type lectin fold
IPR018378 C-type lectin, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:56741 Bates EE et al., "APCs express DCIR, a novel C-type lectin surface receptor containing an immunoreceptor tyrosine-based inhibitory motif." J Immunol 1999 Aug 15;163(4):1973-83
(Latest) J:93065 Flornes LM et al., "Identification of lectin-like receptors expressed by antigen presenting cells and neutrophils and their mapping to a novel gene complex." Immunogenetics 2004 Oct;56(7):506-17
All references(7)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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