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Clec4d Gene Detail
 Symbol
Name
ID
Clec4d
C-type lectin domain family 4, member d
MGI:1298389

Nomenclature History
Synonyms Clecsf8, mcl, mMCL, Mpcl
Genetic Map
Chromosome 6
56.5 cM, cytoband F3
Detailed Genetic Map ± 1 cM
 
Mapping data( 2)

Sequence Map
Chr6:123212135-123225283 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Clec4d ± 2 cM)
TreeFam: TF333341
Sequences
Representative Sequences Length Strain/Species Flank
genomic 17474 NCBI Gene Model | MGI Sequence Detail 13149 C57BL/6J ± Kb
transcript NM_010819 RefSeq | MGI Sequence Detail 1336 C57BL/6
polypeptide Q9Z2H6 UniProt | EBI | MGI Sequence Detail 219 Not Applicable
For the selected sequences
All sequences(23)
Alleles
and
phenotypes 		All alleles(1) : Targeted, knock-out(1)
Polymorphisms RFLP(1) SNPs within 2kb(106 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process immune response
Component integral to membrane, membrane...
Function binding, receptor activity...
External Resources: FuncBase
Expression Literature Summary: (1 records)
Data Summary: Assays (1)    Results (13)    Tissues (13)    Images (1)
Theiler Stages: 22,28
  Assay Type Assays   Results
      Northern blot 1   13
cDNA source data(12)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(13) Genomic(1) cDNA(12)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000030144
DoTS DT.101267428, DT.99842883, DT.99842884
Consensus CDS Project CCDS20513.1
UniGene 441101
DFCI TC1583214
NIA Mouse Gene Index U007386
Entrez Gene 17474
International Mouse Knockout Project Status Clec4d
Protein
domains
InterPro ID Description
IPR001304 C-type lectin
IPR002353 Type II antifreeze protein
IPR016186 C-type lectin-like
IPR016187 C-type lectin fold
Graphical View of Protein Domain Structure
References
(Earliest) J:48677 Balch SG et al., "Cloning of a novel C-type lectin expressed by murine macrophages." J Biol Chem 1998 Jul 17;273(29):18656-64
(Latest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), "The Transcriptional Landscape of the Mammalian Genome" Science 2005;309(5740):1559-1563
All references(5)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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