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Ly6a Gene Detail
 Symbol
Name
ID
Ly6a
lymphocyte antigen 6 complex, locus A
MGI:107527


Nomenclature History
Synonyms Ly-6A.2, Ly-6A/E, Ly-6E.1, Sca-1, Sca1, TAP
Genetic Map
Chromosome 15
42.7 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 2)

Sequence Map
Chr15:74825307-74828318 bp, - strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
Protein SuperFamily: Ly-6-like protein
TreeFam: TF337757
Sequences
Representative Sequences Length Strain/Species Flank
genomic 110454 NCBI Gene Model | MGI Sequence Detail 3012 C57BL/6J ± Kb
transcript NM_010738 RefSeq | MGI Sequence Detail 842 -
polypeptide P05533 UniProt | EBI | MGI Sequence Detail 134 Not Applicable
For the selected sequences
All sequences(22)
Alleles
and
phenotypes
All alleles(3) : Targeted, knock-out(1) Targeted, other(2)
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (1)   Phenotype Images (1)  
Polymorphisms RFLP(1) SNPs within 2kb(26 from dbSNP Build 128)   SNPs within 2kb including multiple locations(32)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Component anchored to membrane, external side of plasma membrane...
External Resources: FuncBase
Expression Literature Summary: (10 records)
Data Summary: Assays (1)    Results (2)    Tissues (2)
Theiler Stages: 15,28
  Assay Type Assays   Results
      RT-PCR 1   2
cDNA source data(198)
External Resources: GEO  ArrayExpress 
Molecular
reagents
All nucleic(201) Genomic(2) cDNA(198) Primer pair(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000075602
DoTS DT.87061206, DT.94376770, DT.94376780
Consensus CDS Project CCDS27540.1
UniGene 425949
DFCI TC1574140
NIA Mouse Gene Index U036299
Entrez Gene 110454
International Mouse Knockout Project Status Ly6a
Protein
domains
InterPro ID Description
IPR001526 CD59 antigen
IPR016054 Ly-6 antigen / uPA receptor -like
IPR018363 CD59 antigen, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:8235 Palfree RG et al., "Ly-6A.2 and Ly-6E.1 molecules are antithetical and identical to MALA-1." Immunogenetics 1986;23(3):197-207
(Latest) J:154167 Morikawa S et al., "Prospective identification, isolation, and systemic transplantation of multipotent mesenchymal stem cells in murine bone marrow." J Exp Med 2009 Oct 26;206(11):2483-96
All references(40)
Other
accession IDs
MGD-MRK-36097

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory