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Vertebrate Homology
Source
Alliance of Genome Resources

Comparative GO Graph (mouse, human, rat, zebrafish)  
Alliance Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SMPD1 HGNC:11120 (HGNC)
6609 (Entrez Gene)
607608 (OMIM)
SMPD1 (Alliance of Genome Resources)
Chr11 p15.4 Chr11:6390440-6394998 (+)
GRCh38
Niemann-Pick disease
Niemann-Pick disease type A
Niemann-Pick disease type B
P17405 (UniProt | EBI)
NM_001007593 (RefSeq)
mouse Smpd1 MGI:98325 (MGI)
20597 (Entrez Gene)
Gene Tree
Smpd1 (Alliance of Genome Resources)
Chr7 55.9 cM Chr7:105203567-105207596 (+)
GRCm39
Niemann-Pick disease
20597 (NCBI Gene Model)
Q04519 (UniProt | EBI)
NM_011421 (RefSeq)
rat Smpd1 RGD:1549719 (Rat Genome Database)
308909 (Entrez Gene)
Smpd1 (Alliance of Genome Resources)
Chr1 q32 NP_001006998 (RefSeq)
NM_001006997 (RefSeq)
zebrafish smpd1 ZDB-GENE-110411-222 (Zebrafish Model Organism Database)
556700 (Entrez Gene)
smpd1 (Alliance of Genome Resources)
Chr10 NP_001313465 (RefSeq)
NM_001326536 (RefSeq)
Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory