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Gene Expression Database (GXD)
GXD collects and integrates the gene expression information in MGI. Its primary emphasis is on endogenous gene expression during mouse development.
Access Data
Search for references on gene expression during development.
Gene Expression Literature Query
Search for detailed gene expression assay results.
Gene Expression Data Query
Search for genes expressed in some anatomical structures and/or developmental stages but not in others.
Gene Expression Data Expanded Query
Search or browse for anatomical structures; includes links to associated expression results.
Mouse Anatomical Dictionary Browser
Search the Edinburgh Mouse Atlas for anatomical terms and query for associated expression data.
EMAGE Anatomical Section Browser
Search for gene expression results using BioMart; data returns can be customized and downloaded.
GXD BioMart
FAQs
How do I...
.. find expression data for a specific gene and tissue? FAQ
.. find expression data for a tissue during development? FAQ
.. find genes expressed in one tissue but not another? FAQ
.. find references that report expression data for a gene at a specific age? FAQ
More FAQs
GXD Includes
03 Apr 2013
14,956
Genes studied in expression references
13,678
Genes with expression assay results
1,387,548
Expression assay results
247,520
Expression images
62,372
Expression assays
1,779
Mouse mutants with expression data
More...
Gene Expression News August 30, 2012
  • The Gene Expression Data Query form has been re-designed to add new search functions and make it easier to use. In addition to gene function (Gene Ontology) terms, you can now use phenotype or disease terms to define gene sets of interest in expression searches. Auto fill lists for these categories and for anatomical structure searches make it easier to find the appropriate search terms. In addition to Theiler stage, age is now available as a search parameter.

  • The mechanisms behind the searches and their returned data summaries have been entirely re-designed. The most noticeable improvement will be the speed of the return. Each search will now return a page with tabbed summaries for the assay results, assays, and genes matching your parameters. Most columns on these summaries are sortable. New columns have been added to provide additional context. The figure links on the assay results tab provide direct access to images of data. Export features have been added to the assay results and genes tabs, allowing results to be downloaded in text or spreadsheet format. The genes list can be forwarded to the MGI batch query to allow you to search for additional information, such as the function, phenotype and/or disease terms associated with the genes of interest.

  • We are pleased to announce that additional RNA in situ hybridization data from the GenePaint database are available at accession number J:122989. The GenePaint data set in MGI now includes nearly 290,000 RNA in situ hybridization results examining the expression of over 2,900 genes at E14.5. Nearly 25,000 images accompany these data.

MGI-Mouse Gene Expression Database (GXD): Send Us Your Data - Gene Expression Database (GXD): Send Us Your Data

Electronic submission speeds up the integration of your data, making it more quickly available and increasing its exposure. It also allows you to include more of your data; GXD accepts both published and unpublished data.

If you have any questions, please email us at gen@jax.org.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Send questions and comments to User Support. 		last database update
04/03/2013
MGI 5.12 		The Jackson Laboratory