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Gene Expression Database (GXD)
GXD collects and integrates the gene expression information in MGI. Its primary emphasis is on endogenous gene expression during mouse development.
Access Data
Search for references on gene expression during development.
Gene Expression Literature Query
Search for detailed gene expression assay results.
Gene Expression Data Query
Search for genes expressed in some anatomical structures and/or developmental stages but not in others.
Gene Expression Data Expanded Query
Search or browse for anatomical structures; includes links to associated expression results.
Mouse Anatomical Dictionary Browser
Search the Edinburgh Mouse Atlas for anatomical terms and query for associated expression data.
EMAGE Anatomical Section Browser
Search for gene expression results using BioMart; data returns can be customized and downloaded.
GXD BioMart
FAQs
How do I...
.. find expression data for a specific gene and tissue? FAQ
.. find expression data for a tissue during development? FAQ
.. find genes expressed in one tissue but not another? FAQ
.. find references that report expression data for a gene at a specific age? FAQ
More FAQs
GXD Includes
01 Feb 2012
14,410
Genes studied in expression references
13,169
Genes with expression assay results
1,134,771
Expression assay results
222,917
Expression images
56,906
Expression assays
1,652
Mouse mutants with expression data
More...
Gene Expression News August 16, 2011
  • We are pleased to announce the inclusion of RNA in situ hybridization and immunohistochemistry data from the GenitoUrinary Development Molecular Anatomy Project (GUDMAP) database. You can view the data set at accession number J:171409. This set includes 92,569 results for: 3,123 genes; 3,561 assays (Immunohistochemistry and RNA in situ hybridizations for E10.5-E17.5 and postnatal specimens); and 8,730 image montages for ~25,000 individual images.

  • GXD's gene expression data have been added, as a new dataset, to the MGI implementation of BioMart. The GXD BioMart provides rapid access to gene expression results. Search returns can be customized, and the results easily downloaded for analysis in the lab. In addition, the GXD BioMart can be interconnected with other BioMarts to enable queries across the combined resources.

  • We are pleased to announce the inclusion of RNA in situ hybridization data from the Brain Gene Expression Map (BGEM) database. You can view the data set at accession number J:162220. This set includes 53,496 results for: 1,451 genes; 1,474 assays (RNA in situ hybridizations at E11.5, E15.5, P7 and P42); and 16,112 images. RNA in situ hybridization data from the Eurexpress project was also recently added to GXD. You can view the data set at accession number J:153498. This set includes ~497,000 results for 6,594 genes in 7,052 assays with more than 118,400 images.

MGI-Mouse Gene Expression Database (GXD): Send Us Your Data - Gene Expression Database (GXD): Send Us Your Data

Electronic submission speeds up the integration of your data, making it more quickly available and increasing its exposure. It also allows you to include more of your data; GXD accepts both published and unpublished data.

If you have any questions, please email us at gen@informatics.jax.org.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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Send questions and comments to User Support. 		last database update
02/01/2012
MGI_4.42
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