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Phenotypes Associated with This Genotype
Genotype
MGI:3785074
Allelic
Composition
Gli3Xt/Gli3Xt
Genetic
Background
involves: 101/H * C3H/HeH * CBA/H
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Gli3Xt mutation (1 available); any Gli3 mutation (84 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging
• number of homozygotes recovered at birth is about 17% of expected numbers
• viability of embryos show significant decrease around day 9 of gestation

embryo
• enlarged, particularly the mandibular arch at 9 days of gestation
• enlarged at 9 days of gestation
• anterior limb buds have abnormal morphology at 9 days
• at 12 days, bud is much wider than normal and inter-digit indentations are less distinct
• preaxial and postaxial enlargement is observed in hind- and fore-limb at 12 days
• increased in size compared to wild-type
• at day 9 of gestation, neural tube may remain open unlike in wild-type embryos
• greatly enlarged relative to wild-type, except rhombomere 5 which is constrained by the otic vesicles
• if neural tube is closed at 9 days, tube is wavy from behind otic vesicle to level of forelimb bud

limbs/digits/tail
• anterior limb buds have abnormal morphology at 9 days
• at 12 days, bud is much wider than normal and inter-digit indentations are less distinct
• preaxial and postaxial enlargement is observed in hind- and fore-limb at 12 days
• increased in size compared to wild-type
• number of complete digits may be as high as eight or nine
• pre- and post-axial extra digits can be seen on feet at 14 days gestation
• separation between digits is less complete and digits may be webbed at 15 days gestation
• bilateral defect of tibia is generally seen
• pre- and post-axial extra digits can be seen on feet at 14 days gestation
• variable amount of fusion between carpals
• terminal phalanx of finger or toe frequently is partially or completely duplicated
• variable amount of fusion between tarsals
• radius may be only rudimentary observed as knob of bone, resulting in hemimelia, at 15 days
• femur is short and thick at 15 days
• bowed in severely affected animals
• represented only by a proximal bone knob, resulting in hemimelia that does not show any left/right bias
• may be split distally
• may be split distally

skeleton
• structure of nasal cartilages is more complex than in wild-type
• paraseptal cartilages are deformed
• variable amount of fusion between carpals
• variable amount of fusion between tarsals
• terminal phalanx of finger or toe frequently is partially or completely duplicated
• radius may be only rudimentary observed as knob of bone, resulting in hemimelia, at 15 days
• femur is short and thick at 15 days
• bowed in severely affected animals
• represented only by a proximal bone knob, resulting in hemimelia that does not show any left/right bias
• may be split distally
• may be split distally
• at 15 days gestation, Os pubis may be distorted
• at 15 days gestation, there is complete division into anterior and posterior parts by failure of hyphophysial cartilage and trabecular region of the central stem to unite
• skulls have an interfrontal bone with high incidence compared to wild-type littermates; in majority of cases, bone is larger in mutant mice than in wild-type
• at 15 days, alae orbitales are heavy and help to form broad pan that the cerebral hemispheres rest on
• at 11 days, ectoderm of anterior face of process is thicker than in wild-type
• at 12 days, process may have grown forward over eye, partially obscuring it
• unlike normal embryos, at day 18 of gestation homozygotes still display C-shaped spine rather than normal S-shape; C shape is retained and accentuated and is observed in newborn animals
• neural arches of cervical vertebrae tend to fuse with adjacent vertebrae in embryos at 15 days gestation

nervous system
• at day 9 of gestation, neural tube may remain open unlike in wild-type embryos
• greatly enlarged relative to wild-type, except rhombomere 5 which is constrained by the otic vesicles
• if neural tube is closed at 9 days, tube is wavy from behind otic vesicle to level of forelimb bud
• brain of newborns is twisted on its major axis
• mesencephalon has bulging appearance in newborn animals
• corpora quadrigemina are abnormally divided laterally in newborn animals
• at 14-16 days gestation, mesencephalon may be exposed; if this is seen, embryos are always anemic and amniotic fluid is bloody
• forepart of head is abnormal due to lack of expansion of forebrain at day 9
• at 9 days, walls of telencephalon are closely approximated
• in newborn, cerebral hemispheres are small and partially obscured by mesencephalon; cerebral hemispheres contain groups of pyknotic cells
• hemispheres are separated by a fluid-filled space extending back to cerebellum
• at 11 days gestation, no invagination between putative cerebral hemispheres has occurred
• nerves pass through cribiform plate, then turn cephalad and terminate in a space filled with connective tissue ahead of cerebral hemispheres
• if neural tube is closed at 9 days, roof of rhombencephalon is abnormally spade-shaped
• at day 10, hindbrain may still be open
• at 13 days, distended hindbrain gives embryo hunch-backed appearance
• twisted in newborn animals
• retains undifferentiated folded form in newborns
• at 13 days, seventh and cochlear part of eighth cranial ganglia are enlarged
• nerves are much larger than in wild-type at birth
• at 12 days gestation, nerves are less developed than in wild-type
• ventrally, optic chiasma is ill-defined; in some animals optic chiasma is absent

vision/eye
• at 15 days, alae orbitales are heavy and help to form broad pan that the cerebral hemispheres rest on
• ventrally, optic chiasma is ill-defined; in some animals optic chiasma is absent
• eyes with thick retinae surrounding lens lack pupils
• in some newborns, eyes may be pigmented hollow ball containing a lens rudiment or may only be a pigment mass
• at 12 days, eyes are reduced and rotated ventrally
• at 11 days, optic cups are small; in some embryos, cup has lost contact with endoderm and is filled with mesoderm
• lumen is constricted at 9 days
• at 11 days gestation, lumen is broad
• not oriented parallel to midline at 9 days
• at 10 days, vesicles are still flattened
• lens induction occurs only posteriorly
• at birth, eyes may be only half diameter of wild-type eyes
• in newborn animals, eyelids remain closed
• at 14 -16 days gestation there is premature partial eyelid closure
• retina is very thick, surrounding entire lens
• retinae exhibit folding in some newborns
• in some newborns, no evidence of eye tissue is observed

craniofacial
• at 15 days gestation, there is complete division into anterior and posterior parts by failure of hyphophysial cartilage and trabecular region of the central stem to unite
• skulls have an interfrontal bone with high incidence compared to wild-type littermates; in majority of cases, bone is larger in mutant mice than in wild-type
• at 15 days, alae orbitales are heavy and help to form broad pan that the cerebral hemispheres rest on
• at 11 days, ectoderm of anterior face of process is thicker than in wild-type
• at 12 days, process may have grown forward over eye, partially obscuring it
• more extensive than in wild-type at 10 days
• enlarged, particularly the mandibular arch at 9 days of gestation
• enlarged at 9 days of gestation
• forehead is abnormal at 10 days of gestation
• anterior part is compressed between abnormally large maxillae and premaxillae in newborn animals
• posterior nasal region is broad and flat
• external nasal processes are reduced in size at 10 days of gestation
• structure of nasal cartilages is more complex than in wild-type
• paraseptal cartilages are deformed
• dorsal part of nasal chamber may be almost obliterated, with ectodermal lining represented by a strip of tissue
• at 12 days, nasal arch is flatter and nasal chamber is partially occluded
• septum is broad and short, and paraseptal cartilages are deformed
• epithelium displays a series of folds, which raises it from the underlying cartilage

hearing/vestibular/ear
• evagination in wall of presumptive utricular region is absent in mutants at 13 days gestation
• otic vesicles are situated more dorsally than in wild-type at 9 days and may remain open to exterior
• in newborns, lumen present only posteriorly and anteriorly, where it joins ampulla; in intervening region, it is seen only as a solid strand of tissue or non-cartilaginous region of the capsule
• poorly differentiated at 15 days gestation

cardiovascular system
• veins are slightly enlarged and run laterally to otic vesicles, not ventrolaterally as in wild-type
• at day 10 pericardium is swollen and often displaced
• oval blood clot is visible in frontal region of head in some embryos at 14 days

taste/olfaction
• more extensive than in wild-type at 10 days
• epithelium displays a series of folds, which raises it from the underlying cartilage

renal/urinary system
• in all mutants kidneys are irregular in outline, but no histological abnormalities are observed

respiratory system
• more extensive than in wild-type at 10 days
• anterior part is compressed between abnormally large maxillae and premaxillae in newborn animals
• posterior nasal region is broad and flat
• external nasal processes are reduced in size at 10 days of gestation
• structure of nasal cartilages is more complex than in wild-type
• paraseptal cartilages are deformed
• dorsal part of nasal chamber may be almost obliterated, with ectodermal lining represented by a strip of tissue
• at 12 days, nasal arch is flatter and nasal chamber is partially occluded
• septum is broad and short, and paraseptal cartilages are deformed
• epithelium displays a series of folds, which raises it from the underlying cartilage

endocrine/exocrine glands
• visceral ectopia is frequently observed; abnormal placement of adrenal glands is exhibited
• at 13 days, number of visible nipples is reduced from 4 pairs to 2 pairs
• partially fills orbit of eyes in some newborns as result of hyperplasia, when normal eye tissue is reduced or absent
• visceral ectopia is frequently observed; females often show ectopic placement of the ovaries
• visceral organs show no histological abnormalities

homeostasis/metabolism
• at day 13 of gestation, embryos show considerable subcutaneous edema
• edema is still observed at 14 and 15 days of gestation; at 15 days, edema is less pronounced but skin appears taut

growth/size/body
• skulls have an interfrontal bone with high incidence compared to wild-type littermates; in majority of cases, bone is larger in mutant mice than in wild-type
• at 11 days, ectoderm of anterior face of process is thicker than in wild-type
• at 12 days, process may have grown forward over eye, partially obscuring it
• forehead is abnormal at 10 days of gestation
• anterior part is compressed between abnormally large maxillae and premaxillae in newborn animals
• posterior nasal region is broad and flat
• external nasal processes are reduced in size at 10 days of gestation
• structure of nasal cartilages is more complex than in wild-type
• paraseptal cartilages are deformed
• dorsal part of nasal chamber may be almost obliterated, with ectodermal lining represented by a strip of tissue
• at 12 days, nasal arch is flatter and nasal chamber is partially occluded
• septum is broad and short, and paraseptal cartilages are deformed
• epithelium displays a series of folds, which raises it from the underlying cartilage
• at 13 days gestation, embryos display enlarged umbilical hernia that includes part of liver

integument
• at 13 days, number of visible nipples is reduced from 4 pairs to 2 pairs
• at day 13 of gestation, embryos show considerable subcutaneous edema
• edema is still observed at 14 and 15 days of gestation; at 15 days, edema is less pronounced but skin appears taut
• at 13 days, forehead and nose exhibit irregular array of epidermal papillae (sensory hairs)

reproductive system
• visceral ectopia is frequently observed; females often show ectopic placement of the ovaries
• visceral organs show no histological abnormalities


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
01/28/2026
MGI 6.24
The Jackson Laboratory