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Rny1 Gene Detail
Summary
  • Symbol
    Rny1
  • Name
    RNA, Y1 small cytoplasmic, Ro-associated
  • Feature Type
    scRNA gene
  • IDs
    MGI:97995
    NCBI Gene: 19872
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:47765004-47765114 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 22.94 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    17 from dbSNP Build 142
  • Strain Annotations
    17
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_97995
 scRNA gene Chr6:47765003-47765114 (-)
129S1/SvImJ MGP_129S1SvImJ_G0009775
 unclassified non-coding RNA gene Chr6:46693691-46693802 (-)
A/J MGP_AJ_G0009761
 unclassified non-coding RNA gene Chr6:44541321-44541432 (-)
AKR/J MGP_AKRJ_G0009745
 unclassified non-coding RNA gene Chr6:46082066-46082177 (-)
BALB/cJ MGP_BALBcJ_G0009744
 unclassified non-coding RNA gene Chr6:44893884-44893995 (-)
C3H/HeJ MGP_C3HHeJ_G0009677
 unclassified non-coding RNA gene Chr6:46117216-46117327 (-)
C57BL/6NJ MGP_C57BL6NJ_G0009987
 unclassified non-coding RNA gene Chr6:47713181-47713292 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0009496
 unclassified non-coding RNA gene Chr6:45846348-45846459 (-)
CBA/J MGP_CBAJ_G0009650
 unclassified non-coding RNA gene Chr6:49731998-49732109 (-)
DBA/2J MGP_DBA2J_G0009678
 unclassified non-coding RNA gene Chr6:44482884-44482995 (-)
FVB/NJ MGP_FVBNJ_G0009694
 unclassified non-coding RNA gene Chr6:44120240-44120351 (-)
LP/J MGP_LPJ_G0009771
 unclassified non-coding RNA gene Chr6:46593399-46593510 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0009663
 unclassified non-coding RNA gene Chr6:52610382-52610493 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0009960
 unclassified non-coding RNA gene Chr6:46003772-46003883 (-)
PWK/PhJ MGP_PWKPhJ_G0009418
 unclassified non-coding RNA gene Chr6:44005276-44005387 (-)
SPRET/EiJ MGP_SPRETEiJ_G0009254
 unclassified non-coding RNA gene Chr6:45426000-45426111 (-)
WSB/EiJ MGP_WSBEiJ_G0009597
 unclassified non-coding RNA gene Chr6:45998610-45998721 (-)



Homology
more
  • Human Ortholog
    RNY1, RNA, Ro60-associated Y1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RNY1, RNA, Ro60-associated Y1
  • Synonyms
    HY1, Y1
  • Links
    NCBI Gene ID: 6084

  • Chr Location
    7q36.1; chr7:148987136-148987248 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 19872 NCBI Gene Model | MGI Sequence Detail 111 C57BL/6J ±  kb
transcript NR_004419 RefSeq | MGI Sequence Detail 111 C3H/An  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 4
    Genomic 3
    cDNA 1

    Microarray probesets 1
Other
Accession IDs
less
MGD-MRK-14004
References
more
  • Summaries
    All 10
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:17937 Crouch D, et al., The molecular cloning of a mouse Ro RNA, my1-like sequence. Nucleic Acids Res. 1989 Jun 26;17(12):4890
  • Latest
    J:153140 Krude T, et al., Y RNA functions at the initiation step of mammalian chromosomal DNA replication. J Cell Sci. 2009 Aug 15;122(Pt 16):2836-45
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory