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Ctxn1 Gene Detail
Summary
  • Symbol
    Ctxn1
  • Name
    cortexin 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:88566
    NCBI Gene: 330695
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:4307660-4309274 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 1.99 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    17 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_88566
 protein coding gene Chr8:4307646-4309274 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033331
 protein coding gene Chr8:1243043-1244670 (-)
A/J MGP_AJ_G0033312
 protein coding gene Chr8:1192333-1193959 (-)
AKR/J MGP_AKRJ_G0033243
 protein coding gene Chr8:1227536-1229162 (-)
BALB/cJ MGP_BALBcJ_G0033312
 protein coding gene Chr8:1245424-1247050 (-)
C3H/HeJ MGP_C3HHeJ_G0033026
 protein coding gene Chr8:1237398-1239024 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033824
 protein coding gene Chr8:1282278-1283904 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030796
 protein coding gene Chr8:1067373-1069013 (-)
CAST/EiJ MGP_CASTEiJ_G0032350
 protein coding gene Chr8:1121196-1122824 (-)
CBA/J MGP_CBAJ_G0032999
 protein coding gene Chr8:1321562-1323188 (-)
DBA/2J MGP_DBA2J_G0033153
 protein coding gene Chr8:1152641-1154267 (-)
FVB/NJ MGP_FVBNJ_G0033100
 protein coding gene Chr8:1191927-1193553 (-)
LP/J MGP_LPJ_G0033247
 protein coding gene Chr8:1163169-1164795 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033135
 protein coding gene Chr8:1296806-1298432 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033841
 protein coding gene Chr8:1211172-1212798 (-)
PWK/PhJ MGP_PWKPhJ_G0032061
 protein coding gene Chr8:1117363-1118990 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031904
 protein coding gene Chr8:1132436-1134060 (-)
WSB/EiJ MGP_WSBEiJ_G0032464
 protein coding gene Chr8:1190715-1192341 (-)



Homology
more
  • Human Ortholog
    CTXN1, cortexin 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CTXN1, cortexin 1
  • Synonyms
    CTXN
  • Links
    NCBI Gene ID: 404217
    neXtProt AC: NX_P60606
    UniProt: P60606

  • Chr Location
    19p13.2; chr19:7924491-7926135 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    914
  • Tissues
    36
  • cDNA Data
    35
  • Literature Summary
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000048644 Ensembl Gene Model | MGI Sequence Detail 1615 C57BL/6J ±  kb
transcript ENSMUST00000053252 Ensembl | MGI Sequence Detail 1212 Not Applicable  
polypeptide ENSMUSP00000057115 Ensembl | MGI Sequence Detail 82 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 36
    cDNA 36

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-2250, MGI:2671001
References
more
  • Summaries
    All 34
    Developmental Gene Expression 6
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:34579 Coulter PM 2nd, et al., Identification of cortexin: a novel, neuron-specific, 82-residue membrane protein enriched in rodent cerebral cortex. J Neurochem. 1993 Aug;61(2):756-9
  • Latest
    J:330827 Yoo D, et al., Little skate genome provides insights into genetic programs essential for limb-based locomotion. Elife. 2022 Oct 26;11:e78345
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory