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Snord85 Gene Detail
Summary
  • Symbol
    Snord85
  • Name
    small nucleolar RNA, C/D box 85
  • Synonyms
    MBII-251, Z50
Location &
Maps
more
  • Sequence Map
    Chr4:130476949-130477013 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 63.50 cM
Strain
Comparison
more
  • SNPs within 2kb
    4 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819558
 snoRNA gene Chr4:130476945-130477017 (+)
129S1/SvImJ MGP_129S1SvImJ_G0039224
 snoRNA gene Chr4:132782542-132782614 (+)
A/J MGP_AJ_G0039220
 snoRNA gene Chr4:127284430-127284502 (+)
AKR/J MGP_AKRJ_G0039150
 snoRNA gene Chr4:130860603-130860675 (+)
BALB/cJ MGP_BALBcJ_G0039203
 snoRNA gene Chr4:127898523-127898595 (+)
C3H/HeJ MGP_C3HHeJ_G0038864
 snoRNA gene Chr4:131078033-131078105 (+)
C57BL/6NJ MGP_C57BL6NJ_G0039751
 snoRNA gene Chr4:137573650-137573722 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0036448
 snoRNA gene Chr4:120390903-120390975 (+)
CAST/EiJ MGP_CASTEiJ_G0037997
 snoRNA gene Chr4:129118084-129118156 (+)
CBA/J MGP_CBAJ_G0038835
 snoRNA gene Chr4:141075570-141075642 (+)
DBA/2J MGP_DBA2J_G0039020
 snoRNA gene Chr4:127713915-127713987 (+)
FVB/NJ MGP_FVBNJ_G0038975
 snoRNA gene Chr4:126528023-126528095 (+)
LP/J MGP_LPJ_G0039064
 snoRNA gene Chr4:132930498-132930570 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0038976
 snoRNA gene Chr4:145784676-145784748 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0039850
 snoRNA gene Chr4:131226636-131226708 (+)
PWK/PhJ MGP_PWKPhJ_G0037683
 snoRNA gene Chr4:124349351-124349423 (+)
SPRET/EiJ MGP_SPRETEiJ_G0037431
 snoRNA gene Chr4:127088012-127088084 (+)
WSB/EiJ MGP_WSBEiJ_G0038226
 snoRNA gene Chr4:131372323-131372395 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217460 NCBI Gene Model | MGI Sequence Detail 65 C57BL/6J ±  kb
transcript NR_028565 RefSeq | MGI Sequence Detail 65 C57BL/6  
For the selected sequence
References
more
  • Summaries
    All 8
    Phenotypes 1
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
  • Latest
    J:340213 Chanda K, et al., Altered Levels of Long NcRNAs Meg3 and Neat1 in Cell And Animal Models Of Huntington's Disease. RNA Biol. 2018;15(10):1348-1363
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory