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Hmgb1-ps1 Pseudogene Detail
Summary
  • Symbol
    Hmgb1-ps1
  • Name
    high mobility group box 1, pseudogene 1
  • Synonyms
    Hmg-A, OTTMUSG00000005439
Location &
Maps
more
  • Sequence Map
    Chr11:41032590-41033223 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 24.50 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    21 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3768536
 pseudogene Chr11:41032485-41034809 (+)
129S1/SvImJ MGP_129S1SvImJ_G0011864
 pseudogene Chr2:134481075-134482278 (+)
A/J MGP_AJ_G0011854
 pseudogene Chr2:129034961-129035578 (+)
AKR/J MGP_AKRJ_G0011822
 pseudogene Chr2:132769369-132769986 (+)
BALB/cJ MGP_BALBcJ_G0011833
 pseudogene Chr2:129422699-129423313 (+)
C3H/HeJ MGP_C3HHeJ_G0011715
 pseudogene Chr2:133196347-133196964 (+)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0012231
 pseudogene Chr7:105226801-105227519 (-)
CAST/EiJ MGP_CASTEiJ_G0011505
 pseudogene Chr2:133468767-133469383 (+)
CBA/J MGP_CBAJ_G0011690
 pseudogene Chr2:143782872-143783489 (+)
DBA/2J MGP_DBA2J_G0011746
 pseudogene Chr2:128420273-128420890 (+)
FVB/NJ MGP_FVBNJ_G0011749
 pseudogene Chr2:127055802-127056419 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0011754
 pseudogene Chr2:147602853-147603422 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0012131
 pseudogene Chr2:132719196-132720050 (+)
PWK/PhJ MGP_PWKPhJ_G0011352
 pseudogene Chr2:127988755-127989369 (+)
SPRET/EiJ MGP_SPRETEiJ_G0011170
 pseudogene Chr2:131869323-131869934 (+)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Hmgb1-ps1
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000084129 Ensembl Gene Model | MGI Sequence Detail 634 C57BL/6J ±  kb
transcript ENSMUST00000119350 Ensembl | MGI Sequence Detail 634 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    Genomic 1
Other
Accession IDs
less
MGI:3651751
References
more
  • Summaries
    All 11
    Phenotypes 4
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:128898 Tecle E, et al., Recent integrations of mammalian Hmg retropseudogenes. J Genet. 2006 Dec;85(3):179-85
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory