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Garin4 Gene Detail
Summary
  • Symbol
    Garin4
  • Name
    golgi associated RAB2 interactor family member 4
  • Synonyms
    4933417M04Rik, Fam71a
  • Feature Type
    protein coding gene
  • IDs
    MGI:3588202
    NCBI Gene: 619288
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:190894781-190897014 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 96.28 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    15 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3588202
 protein coding gene Chr1:190894781-190897014 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016940
 protein coding gene Chr1:198189843-198192076 (-)
A/J MGP_AJ_G0016919
 protein coding gene Chr1:190065832-190068065 (-)
AKR/J MGP_AKRJ_G0016884
 protein coding gene Chr1:195710708-195712941 (-)
BALB/cJ MGP_BALBcJ_G0016877
 protein coding gene Chr1:190743770-190746003 (-)
C3H/HeJ MGP_C3HHeJ_G0016701
 protein coding gene Chr1:196546029-196548262 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017340
 protein coding gene Chr1:204504952-204507185 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015047
 protein coding gene Chr1:180959657-180961956 (-)
CAST/EiJ MGP_CASTEiJ_G0016284
 protein coding gene Chr1:196136628-196138864 (-)
CBA/J MGP_CBAJ_G0016675
 protein coding gene Chr1:212084786-212087019 (-)
DBA/2J MGP_DBA2J_G0016781
 protein coding gene Chr1:188790254-188792487 (-)
FVB/NJ MGP_FVBNJ_G0016777
 protein coding gene Chr1:186914881-186917114 (-)
LP/J MGP_LPJ_G0016856
 protein coding gene Chr1:199368337-199370570 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016809
 protein coding gene Chr1:218792333-218794566 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017377
 protein coding gene Chr1:195578914-195581147 (-)
PWK/PhJ MGP_PWKPhJ_G0016071
 protein coding gene Chr1:188076116-188078349 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015847
 protein coding gene Chr1:194578750-194580967 (-)
WSB/EiJ MGP_WSBEiJ_G0016346
 protein coding gene Chr1:195793572-195795805 (-)



Homology
more
  • Human Ortholog
    GARIN4, golgi associated RAB2 interactor family member 4
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GARIN4, golgi associated RAB2 interactor family member 4
  • Synonyms
    FAM71A, GARIL4, GARI-L4
  • Links
    NCBI Gene ID: 149647
    neXtProt AC: NX_Q8IYT1
    UniProt: Q8IYT1

  • Chr Location
    1q32.3; chr1:212624474-212626775 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 619288 NCBI Gene Model | MGI Sequence Detail 2234 C57BL/6J ±  kb
transcript NM_001109759 RefSeq | MGI Sequence Detail 2234 C57BL/6  
polypeptide NP_001103229 RefSeq | MGI Sequence Detail 585 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR022168 Golgi associated RAB2 interactor protein-like, Rab2B-binding domain
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 3
References
more
  • Summaries
    All 18
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:320047 Fukuda M, et al., Large scale screening for novel rab effectors reveals unexpected broad Rab binding specificity. Mol Cell Proteomics. 2008 Jun;7(6):1031-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory