Snhg9 MGI Mouse Gene Detail - MGI:1920724 - small nucleolar RNA host gene 9

Sequence Map

Chr17:24938505-24938939 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920724	lncRNA gene	Chr17:24938496-24938961 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003377	antisense lncRNA gene	Chr17:23733324-23733757 (-)
A/J	MGP_AJ_G0003353	antisense lncRNA gene	Chr17:23084535-23084968 (-)
AKR/J	MGP_AKRJ_G0003336	antisense lncRNA gene	Chr17:23163460-23163893 (-)
BALB/cJ	MGP_BALBcJ_G0003342	antisense lncRNA gene	Chr17:23277563-23277996 (-)
C3H/HeJ	MGP_C3HHeJ_G0003295	antisense lncRNA gene	Chr17:23523408-23523841 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003483	antisense lncRNA gene	Chr17:24785794-24786228 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003000	antisense lncRNA gene	Chr17:20553757-20554190 (-)
CAST/EiJ	MGP_CASTEiJ_G0003258	antisense lncRNA gene	Chr17:23381303-23381736 (-)
CBA/J	MGP_CBAJ_G0003291	antisense lncRNA gene	Chr17:25637383-25637816 (-)
DBA/2J	MGP_DBA2J_G0003297	antisense lncRNA gene	Chr17:22676782-22677215 (-)
FVB/NJ	MGP_FVBNJ_G0003315	antisense lncRNA gene	Chr17:22396297-22396730 (-)
LP/J	MGP_LPJ_G0003370	antisense lncRNA gene	Chr17:24037707-24038140 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003304	antisense lncRNA gene	Chr17:25330551-25330984 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003486	antisense lncRNA gene	Chr17:23445594-23446027 (-)
PWK/PhJ	MGP_PWKPhJ_G0003218	antisense lncRNA gene	Chr17:21423814-21424248 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003162	antisense lncRNA gene	Chr17:21493277-21493709 (-)
WSB/EiJ	MGP_WSBEiJ_G0003292	antisense lncRNA gene	Chr17:23519695-23520128 (-)

Vertebrate Orthology Source

Alliance of Genome Resources

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	73474	NCBI Gene Model \| MGI Sequence Detail	435	C57BL/6J	± kb
	transcript	NR_027900	RefSeq \| MGI Sequence Detail	183	C57BL/6

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Summaries

All 16

Phenotypes 5
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:340252 Wang Y, et al., The gut microbiota reprograms intestinal lipid metabolism through long noncoding RNA Snhg9. Science. 2023 Aug 25;381(6660):851-857

TSS for Snhg9:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/16/2024 MGI 6.23