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Thoc1 Gene Detail
Summary
  • Symbol
    Thoc1
  • Name
    THO complex 1
  • Synonyms
    3110002N20Rik, MGC:28284, NMP-84
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919668
    NCBI Gene: 225160
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:9958176-9995486 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 4.91 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    82 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919668
 protein coding gene Chr18:9957906-9995489 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024144
 protein coding gene Chr18:6881620-6924797 (+)
A/J MGP_AJ_G0024106
 protein coding gene Chr18:6839454-6876626 (+)
AKR/J MGP_AKRJ_G0024073
 protein coding gene Chr18:7008973-7046131 (+)
BALB/cJ MGP_BALBcJ_G0024105
 protein coding gene Chr18:6816484-6854464 (+)
C3H/HeJ MGP_C3HHeJ_G0023872
 protein coding gene Chr18:6898005-6937686 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024550
 protein coding gene Chr18:7297770-7338446 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021989
 protein coding gene Chr18:6380304-6417669 (+)
CAST/EiJ MGP_CASTEiJ_G0023349
 protein coding gene Chr18:6814181-6853120 (+)
CBA/J MGP_CBAJ_G0023844
 protein coding gene Chr18:7322837-7365893 (+)
DBA/2J MGP_DBA2J_G0023973
 protein coding gene Chr18:6686841-6727027 (+)
FVB/NJ MGP_FVBNJ_G0023938
 protein coding gene Chr18:6652929-6691011 (+)
LP/J MGP_LPJ_G0024056
 protein coding gene Chr18:6976181-7026203 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023967
 protein coding gene Chr18:7514701-7556991 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024596
 protein coding gene Chr18:6832841-6872126 (+)
PWK/PhJ MGP_PWKPhJ_G0023095
 protein coding gene Chr18:6728025-6756487 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022905
 protein coding gene Chr18:7131729-7178524 (+)
WSB/EiJ MGP_WSBEiJ_G0023415
 protein coding gene Chr18:6827932-6866545 (+)



Homology
more
  • Human Ortholog
    THOC1, THO complex subunit 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    THOC1, THO complex subunit 1
  • Synonyms
    DFNA86, HPR1, P84, P84N5
  • Links
    NCBI Gene ID: 9984
    neXtProt AC: NX_Q96FV9
    UniProt: Q96FV9

  • Chr Location
    18p11.32; chr18:214520-268050 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with human THOC1 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotypes from 4 alleles in 3 genetic backgrounds
    19 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mutations in this gene result in embryonic lethality around implantation in homozygotes.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    23
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    718
  • Tissues
    10
  • cDNA Data
    13
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 225160 NCBI Gene Model | MGI Sequence Detail 37311 C57BL/6J ±  kb
    transcript NM_001417754 RefSeq | MGI Sequence Detail 4036 C57BL/6  
    polypeptide Q8R3N6 UniProt | EBI | MGI Sequence Detail 657 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 19
      cDNA 18
      Primer pair 1

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:2147345
    References
    more
    • Summaries
      All 53
      Developmental Gene Expression 4
      Gene Ontology 9
      Phenotypes 19
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345229 Bhattacharjee R, et al., Compromised transcription-mRNA export factor THOC2 causes R-loop accumulation, DNA damage and adverse neurodevelopment. Nat Commun. 2024 Feb 8;15(1):1210
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory