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Slc9d1 Gene Detail
Summary
  • Symbol
    Slc9d1
  • Name
    solute carrier family 9 member D1
  • Synonyms
    B230339H12Rik, Tmco3
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444946
    NCBI Gene: 234076
  • Alliance
    genome feature page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:13338190-13372924 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 5.73 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1121 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444946
 protein coding gene Chr8:13333214-13372924 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033377
 protein coding gene Chr8:10627615-10666126 (+)
A/J MGP_AJ_G0033357
 protein coding gene Chr8:10241087-10280925 (+)
AKR/J MGP_AKRJ_G0033288
 protein coding gene Chr8:10523225-10559929 (+)
BALB/cJ MGP_BALBcJ_G0033358
 protein coding gene Chr8:10374909-10411449 (+)
C3H/HeJ MGP_C3HHeJ_G0033071
 protein coding gene Chr8:10730793-10772737 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033870
 protein coding gene Chr8:11000999-11035460 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030839
 protein coding gene Chr8:9746343-9781303 (+)
CAST/EiJ MGP_CASTEiJ_G0032393
 protein coding gene Chr8:10490999-10533056 (+)
CBA/J MGP_CBAJ_G0033044
 protein coding gene Chr8:11458645-11502883 (+)
DBA/2J MGP_DBA2J_G0033197
 protein coding gene Chr8:10190369-10227356 (+)
FVB/NJ MGP_FVBNJ_G0033146
 protein coding gene Chr8:10207354-10242666 (+)
LP/J MGP_LPJ_G0033291
 protein coding gene Chr8:10534118-10574706 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033180
 protein coding gene Chr8:11689963-11727196 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033887
 protein coding gene Chr8:10580171-10621222 (+)
PWK/PhJ MGP_PWKPhJ_G0032106
 protein coding gene Chr8:10243002-10280029 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031948
 protein coding gene Chr8:10472296-10508804 (+)
WSB/EiJ MGP_WSBEiJ_G0032509
 protein coding gene Chr8:10616834-10654604 (+)



Homology
more
  • Human Ortholog
    SLC9D1, solute carrier family 9 member D1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC9D1, solute carrier family 9 member D1
  • Synonyms
    C13orf11, TMCO3
  • Links
    NCBI Gene ID: 55002
    UniProt: Q6UWJ1

  • Chr Location
    13q34; chr13:113490816-113554590 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    19
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    759
  • Tissues
    31
  • cDNA Data
    47
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038497 Ensembl Gene Model | MGI Sequence Detail 34735 C57BL/6J ±  kb
transcript ENSMUST00000045229 Ensembl | MGI Sequence Detail 4335 Not Applicable  
polypeptide ENSMUSP00000040347 Ensembl | MGI Sequence Detail 678 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000016400 transmembrane and coiled-coil domain-containing protein 3
    (term hierarchy)
  • InterPro Domains
    IPR006153 Cation/H+ exchanger
    IPR045158 K(+) efflux antiporter 4/5/6-like
    IPR038770 Sodium/solute symporter superfamily
  • GlyGen
    Q8BH01 4 sites, 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 47
    cDNA 47

    Microarray probesets 4
Other
Accession IDs
less
MGI:2142882, MGI:8329951
References
more
  • Summaries
    All 37
    Developmental Gene Expression 2
    Gene Ontology 6
    Phenotypes 11
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
05/12/2026
MGI 6.24 		The Jackson Laboratory