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Gene Expression Data
Assay Details
Assay
Reference: J:70065 Buck A, et al., Embryonic expression of the murine homologue of SALL1, the gene mutated in Townes-Brocks syndrome. Mech Dev. 2001 Jun;104(1-2):143-6
Assay type: RNA in situ
MGI Accession ID: MGI:2383966
Gene symbol: Sall1
Gene name: spalt like transcription factor 1
Probe: Sall1 probe2
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1A: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: future brain Present 1A Expression is in a broad anterior region of the prospective head.

Specimen 1B: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: neural ectoderm Present Regionally restricted 1B Expression is in a broad anterior region of the prospective head and in the neural groove.

Specimen 1C: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future hindbrain Present Regionally restricted 1C Expression is at the midbrain-hindbrain boundary.
TS15: olfactory placode Present 1C
TS15: future midbrain Present Regionally restricted 1C Expression is in the anterior midbrain and at the midbrain-hindbrain boundary.
TS15: neural tube Present Regionally restricted 1C Expression is in the epindymal and mantle layer.
TS15: tail neural tube Present Regionally restricted 1C Expression is in the epindymal and mantle layer.
TS15: tail mesenchyme Present 1C
TS15: branchial arch Present 1C
TS15: mesonephros Present 1C

Specimen 1D: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future hindbrain Present 1D
TS15: future midbrain Present 1D
TS15: olfactory placode Present 1D

Specimen 1E: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: oral region Present Regionally restricted 1E Expression is in the mesenchyme surrounding the oral cavity.
TS15: 3rd branchial arch Present 1E
TS15: branchial arch Present Regionally restricted 1E The authors describe expression in the 4th arch.

Specimen 1F: embryonic day 9.5 (more )
Note: transverse section.
Structure Level Pattern Image Note
TS15: neural tube Present Regionally restricted 1F Expression is in the dorsal neural tube.
TS15: tail neural tube Present Regionally restricted 1F Expression is in the dorsal neural tube.
TS15: 3rd branchial arch Present 1F
TS15: mesonephros Present 1F
TS15: branchial arch Present Regionally restricted 1F The authors describe expression in the 4th arch.

Specimen 1G: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forelimb bud Present 1G
TS17: hindlimb bud Present 1G
TS17: lens pit Present 1G
TS17: medial-nasal process Present 1G
TS17: telencephalon Present 1G
TS17: hindbrain Weak Regionally restricted 1G Expression at the midbrain-hindbrain boundary has decreased.
TS17: midbrain Weak Regionally restricted 1G Expression at the midbrain-hindbrain boundary has decreased.
TS17: tail mesenchyme Present 1G

Specimen 1H: embryonic day 10.5 (more )
Note: transverse section.
Structure Level Pattern Image Note
TS17: lens pit Present 1H

Specimen 1I: embryonic day 11.5 (more )
Note: sagittal section.
Structure Level Pattern Image Note
TS19: lens vesicle Present 1I

Specimen 1J: embryonic day 11.5 (more )
Note: transverse section.
Structure Level Pattern Image Note
TS19: telencephalon Present Regionally restricted 1J Expression is in the olfactory bulbs.

Specimen 1K: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: genital tubercle Strong 1K

Specimen 1L: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 1L Transcripts are prominent in the region of the telencephalon and the olfactory bulbs.

Specimen 1M: embryonic day 12.5 (more )
Note: frontal section.
Structure Level Pattern Image Note
TS20: spinal cord mantle layer Present 1M
TS20: spinal cord ventricular layer Present 1M

Specimen 1N,O,P: embryonic day 12.5 (more )
Note: sagittal section.
Structure Level Pattern Image Note
TS20: diencephalon ventricular layer Present Regionally restricted 1N Expression is in the tissue surrounding the ventricles.
TS20: hindbrain lateral wall Present Regionally restricted 1N Expression is in the tissue surrounding the ventricles.
TS20: telencephalon ventricular layer Present Regionally restricted 1N Expression is in the tissue surrounding the ventricles.
TS20: genital tubercle Present Regionally restricted 1N Expression is in the epithelium and mesenchyme.
TS20: esophagus mesenchyme Present 1N , 1O
TS20: trachea mesenchyme Present 1N , 1O
TS20: mesenchyme of metanephros Present Regionally restricted 1P , 1N Expression is in the medullar region.
TS20: metanephros Present Regionally restricted 1P , 1N Expression is in the cortical region.

Specimen 1Q,R,S: embryonic day 18.5 (more )
Note: sagittal section.
Structure Level Pattern Image Note
TS26: metanephros Present 1Q
TS26: glomerular tuft Present 1R , 1Q
TS26: renal cortex Present Regionally restricted 1R , 1Q Expression is in the cortex cells subadjacent to the fibrous capsule.
TS26: cortical renal tubule Present 1Q , 1S

Specimen 2A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forelimb bud Present Graded 2A Expression is more prominent in the posterior region.
TS17: hindlimb bud Present Graded 2A Expression is more prominent in the posterior region.

Specimen 2B: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: footplate apical ectodermal ridge Present Uniform 2B
TS19: handplate apical ectodermal ridge Present Uniform 2B
TS19: footplate mesenchyme Present Regionally restricted 2B Expression is divided into a proximal domain and one underlying the AER.
TS19: handplate mesenchyme Present Regionally restricted 2B Expression is divided into a proximal domain and one underlying the AER.

Specimen 2C: embryonic day 11.5 (more )
Note: sagittal section.
Structure Level Pattern Image Note
TS19: handplate apical ectodermal ridge Present Uniform 2C
TS19: handplate mesenchyme Present Regionally restricted 2C Expression is in the mesenchyme underlying the AER and in the dorsal and ventral mesenchyme.

Specimen 2D: embryonic day 11.5 (more )
Note: transverse section.
Structure Level Pattern Image Note
TS19: footplate mesenchyme Present Regionally restricted 2D Expression is anterior and posterior.

Specimen 2E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: foot mesenchyme Present Regionally restricted 2E The distance between the proximal and distal expression domain has increased from 11.5dpc.
TS20: hand mesenchyme Present Regionally restricted 2E The distance between the proximal and distal expression domain has increased from 11.5dpc.
TS20: forelimb interdigital region Present 2E
TS20: hindlimb interdigital region Present 2E

Specimen 2F: embryonic day 12.5 (more )
Note: transverse section.
Structure Level Pattern Image Note
TS20: interdigital region between forelimb digits 2 and 3 mesenchyme Present 2F
TS20: interdigital region between forelimb digits 3 and 4 mesenchyme Present 2F
TS20: hand epithelium Present Regionally restricted 2F Expression persists in the AER.

Specimen 2G: embryonic day 12.5 (more )
Note: sagittal section.
Structure Level Pattern Image Note
TS20: foot mesenchyme Present Regionally restricted 2G Expression is dorsal and ventral.

Specimen 2H upper: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: forelimb digit mesenchyme Present Regionally restricted 2H upper Expression is in the mesenchyme underlying the phalangeal tips.
TS21: forelimb Weak Regionally restricted 2H upper Weak expression in proximal part of limb bud.

Specimen 2H lower: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: hindlimb digit mesenchyme Present Regionally restricted 2H lower Expression is in the mesenchyme uderlying the phalangeal tips.
TS21: hindlimb Weak Regionally restricted 2H lower Weak expression in proximal part of limb bud.

Specimen 2I: embryonic day 13.5 (more )
Note: transverse section.
Structure Level Pattern Image Note
TS21: forelimb digit 2 mesenchyme Present Regionally restricted 2I Expression is ventral.
TS21: forelimb digit 3 mesenchyme Present Regionally restricted 2I Expression is ventral.

Specimen 2J: embryonic day 13.5 (more )
Note: sagittal section.
Structure Level Pattern Image Note
TS21: forelimb digit 3 mesenchyme Present Regionally restricted 2J Expression is in the ventral mesenchyme underlying the phylangeal tip.

Specimen 2K upper: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: forelimb digit mesenchyme Weak Regionally restricted 2K upper Weak expression in distal digital tip.

Specimen 2K lower: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: hindlimb digit mesenchyme Weak Regionally restricted 2K lower Weak expression in distal digit tips.

Specimen 2L: embryonic day 14.5 (more )
Note: sagittal section.
Structure Level Pattern Image Note
TS22: hand mesenchyme Present Regionally restricted 2L Expression is in the AER and the underlying mesenchyme.
TS22: hand skin Present Regionally restricted 2L Expression is in the AER and the underlying mesenchyme.

Specimen 2M: embryonic day 14.5 (more )
Note: transverse section.
Structure Level Pattern Image Note
TS22: foot Present Regionally restricted 2M Expression is on the ventral side of the proximal region.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/07/2024
MGI 6.23
The Jackson Laboratory