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Sdr42e1 Gene Detail
Summary
  • Symbol
    Sdr42e1
  • Name
    short chain dehydrogenase/reductase family 42E, member 1
  • Synonyms
    4632417N05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921282
    NCBI Gene: 74032
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:118388138-118400428 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 64.69 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    425 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921282
 protein coding gene Chr8:118388138-118400428 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034175
 protein coding gene Chr8:120868035-120880312 (-)
A/J MGP_AJ_G0034155
 protein coding gene Chr8:115916497-115928936 (-)
AKR/J MGP_AKRJ_G0034082
 protein coding gene Chr8:119285758-119298971 (-)
BALB/cJ MGP_BALBcJ_G0034149
 protein coding gene Chr8:116116038-116128323 (-)
C3H/HeJ MGP_C3HHeJ_G0033860
 protein coding gene Chr8:120015370-120030105 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034669
 protein coding gene Chr8:124931648-124943920 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031611
 protein coding gene Chr8:108834717-108848066 (-)
CAST/EiJ MGP_CASTEiJ_G0033187
 protein coding gene Chr8:119900253-119912617 (-)
CBA/J MGP_CBAJ_G0033833
 protein coding gene Chr8:129475496-129487755 (-)
DBA/2J MGP_DBA2J_G0033989
 protein coding gene Chr8:115144414-115156693 (-)
FVB/NJ MGP_FVBNJ_G0033932
 protein coding gene Chr8:114156060-114169919 (-)
LP/J MGP_LPJ_G0034078
 protein coding gene Chr8:120998196-121010495 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033979
 protein coding gene Chr8:132033765-132046320 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034687
 protein coding gene Chr8:119398814-119411103 (-)
PWK/PhJ MGP_PWKPhJ_G0032889
 protein coding gene Chr8:114865337-114877712 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032729
 protein coding gene Chr8:118116293-118128513 (-)
WSB/EiJ MGP_WSBEiJ_G0033303
 protein coding gene Chr8:120106499-120118857 (-)



Homology
more
  • Human Ortholog
    SDR42E1, short chain dehydrogenase/reductase family 42E, member 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SDR42E1, short chain dehydrogenase/reductase family 42E, member 1
  • Synonyms
    HSPC105
  • Links
    NCBI Gene ID: 93517
    UniProt: Q8WUS8

  • Chr Location
    16q23.3; chr16:81988855-82011481 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    884
  • Tissues
    19
  • cDNA Data
    25
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 74032 NCBI Gene Model | MGI Sequence Detail 12291 C57BL/6J ±  kb
    transcript NM_028725 RefSeq | MGI Sequence Detail 2867 C57BL/6  
    polypeptide Q9D665 UniProt | EBI | MGI Sequence Detail 394 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • Protein Ontology
      PR:000032585 short-chain dehydrogenase/reductase family 42E member 1
      (term hierarchy)
    • EC
      1.1.1.-
    • InterPro Domains
      IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase
      IPR050177 Bifunctional lipid A modification and metabolic enzymes
      IPR036291 NAD(P)-binding domain superfamily
    Molecular
    Reagents
    less
    • All nucleic 25
      cDNA 25

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2142464
    References
    more
    • Summaries
      All 26
      Developmental Gene Expression 1
      Gene Ontology 1
      Phenotypes 5
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    03/25/2025
    MGI 6.24     		The Jackson Laboratory