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Cpne4 Gene Detail
Summary
  • Symbol
    Cpne4
  • Name
    copine IV
  • Synonyms
    3632411M23Rik, 4933406O10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921270
    NCBI Gene: 74020
  • Alliance
    genome feature page
  • Transcription Start Sites
    14 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:104443900-104911747 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 56.61 cM, cytoband F1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    15465 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921270
 protein coding gene Chr9:104424485-104911747 (+)
129S1/SvImJ ENSMUSG00200039129
 protein coding gene Chr9:101595777-102102575 (+)
A/J ENSMUSG00195016533
 protein coding gene Chr9:100820464-101327373 (+)
AKR/J ENSMUSG00220021173
 protein coding gene Chr9:101210052-101716910 (+)
BALB/cJ ENSMUSG00180023496
 protein coding gene Chr9:101136974-101643869 (+)
C3H/HeJ ENSMUSG00175030645
 protein coding gene Chr9:101479581-101986413 (+)
C57BL/6NJ ENSMUSG00215023805
 protein coding gene Chr9:101464350-101951885 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032600
 protein coding gene Chr9:99971069-100445304 (+)
CAST/EiJ ENSTCUG00005024202
 protein coding gene Chr9:101274652-101774328 (+)
CBA/J ENSMUSG00210043090
 protein coding gene Chr9:101311384-101805393 (+)
DBA/2J ENSMUSG00185041431
 protein coding gene Chr9:101481827-101988652 (+)
FVB/NJ ENSMUSG00205022654
 protein coding gene Chr9:101481140-101978479 (+)
JF1/MsJ ENSUMUG00000044857
 protein coding gene Chr9:101316932-101804763 (+)
LP/J ENSMUSG00230018451
 protein coding gene Chr9:101650866-102138199 (+)
NOD/ShiLtJ ENSMUSG00190035869
 protein coding gene Chr9:101122595-101629449 (+)
NZO/HlLtJ ENSMUSG00225024417
 protein coding gene Chr9:101870972-102358304 (+)
PWK/PhJ ENSLUMG00010035095
 protein coding gene Chr9:101263939-101757681 (+)
SPRET/EiJ ENSMSPG00010041975
 protein coding gene Chr9:103160831-103654599 (+)
WSB/EiJ ENSIUOG00005023162
 protein coding gene Chr9:100557023-101047511 (+)



Homology
more
  • Human Ortholog
    CPNE4, copine 4
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CPNE4, copine 4
  • Synonyms
    COPN4, CPN4
  • Links
    NCBI Gene ID: 131034
    UniProt: Q96A23

  • Chr Location
    3q22.1; chr3:131533555-132285410 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    756
  • Tissues
    24
  • cDNA Data
    8
  • Literature Summary
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 74020 NCBI Gene Model | MGI Sequence Detail 467848 C57BL/6J ±  kb
transcript NM_028719 RefSeq | MGI Sequence Detail 3787 C57BL/6  
polypeptide Q8BLR2 UniProt | EBI | MGI Sequence Detail 557 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 8
    Primer pair 1
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1918284
References
more
  • Summaries
    All 32
    Developmental Gene Expression 7
    Gene Ontology 4
    Phenotypes 3
  • Earliest
    J:86882 Creutz CE, et al., The copines, a novel class of C2 domain-containing, calcium-dependent, phospholipid-binding proteins conserved from Paramecium to humans. J Biol Chem. 1998 Jan 16;273(3):1393-402
  • Latest
    J:375094 Murillo-Rincon AP, et al., Positional programs in early murine facial development and their role in human facial shape variability. Nat Commun. 2025 Nov 18;16(1):10112
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory