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Rpusd1 Gene Detail
Summary
  • Symbol
    Rpusd1
  • Name
    RNA pseudouridylate synthase domain containing 1
  • Synonyms
    2310051D06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919186
    NCBI Gene: 106707
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:25946644-25950438 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 12.83 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    266 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919186
 protein coding gene Chr17:25943758-25950438 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023362
 protein coding gene Chr17:24818950-24824544 (+)
A/J MGP_AJ_G0023321
 protein coding gene Chr17:24098305-24102010 (+)
AKR/J MGP_AKRJ_G0023287
 protein coding gene Chr17:24203825-24207554 (+)
BALB/cJ MGP_BALBcJ_G0023326
 protein coding gene Chr17:24324170-24327895 (+)
C3H/HeJ MGP_C3HHeJ_G0023086
 protein coding gene Chr17:24586191-24589896 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023768
 protein coding gene Chr17:25869420-25873125 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021244
 protein coding gene Chr17:21560499-21564243 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0023061
 protein coding gene Chr17:26779610-26783315 (+)
DBA/2J MGP_DBA2J_G0023191
 protein coding gene Chr17:23699979-23703684 (+)
FVB/NJ MGP_FVBNJ_G0023161
 protein coding gene Chr17:23437834-23441538 (+)
LP/J MGP_LPJ_G0023268
 protein coding gene Chr17:25113934-25119608 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023180
 protein coding gene Chr17:26393495-26398114 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023808
 protein coding gene Chr17:24523692-24527396 (+)
PWK/PhJ MGP_PWKPhJ_G0022337
 protein coding gene Chr17:22461823-22465626 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022155
 protein coding gene Chr17:22590848-22596617 (+)
WSB/EiJ MGP_WSBEiJ_G0022651
 protein coding gene Chr17:24573659-24577643 (+)



Homology
more
  • Human Ortholog
    RPUSD1, RNA pseudouridine synthase domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPUSD1, RNA pseudouridine synthase domain containing 1
  • Synonyms
    C16orf40, RLUCL
  • Links
    NCBI Gene ID: 113000
    UniProt: Q9UJJ7

  • Chr Location
    16p13.3; chr16:784974-788397 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    27
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041199 Ensembl Gene Model | MGI Sequence Detail 3795 C57BL/6J ±  kb
transcript ENSMUST00000047273 Ensembl | MGI Sequence Detail 1745 Not Applicable  
polypeptide ENSMUSP00000043825 Ensembl | MGI Sequence Detail 306 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000031248 RNA pseudouridylate synthase domain-containing protein 1
    (term hierarchy)
  • InterPro Domains
    IPR020103 Pseudouridine synthase, catalytic domain superfamily
    IPR006145 Pseudouridine synthase, RsuA/RluA-like
    IPR050188 RluA Pseudouridine Synthase
Molecular
Reagents
less
  • All nucleic 27
    cDNA 27

    Microarray probesets 3
Other
Accession IDs
less
MGI:2146980
References
more
  • Summaries
    All 25
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory