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Trav12n-1 Gene Detail
Summary
  • Symbol
    Trav12n-1
  • Name
    T cell receptor alpha variable 12N-1
  • Synonyms
    100043218, Gm11046
Location &
Maps
more
  • Sequence Map
    Chr14:53393064-53393545 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.25 cM
Strain
Comparison
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  • Strain Annotations
    4
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3782477
gene segment Chr14:53392969-53393545 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0002502
gene segment Chr14:45762952-46577123 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0002516
gene segment Chr14:46566373-46566902 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0002489
gene segment Chr14:45007683-45008250 (+)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV18, T cell receptor alpha variable 18
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV18, T cell receptor alpha variable 18
  • Synonyms
    TCRAV18S1
  • Links
    NCBI Gene ID: 28665
    UniProt: A0A075B6X5

  • Chr Location
    14q11.2; chr14:22003106-22003673 (+)  GRCh38

Gene Ontology
(GO)
Classifications
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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 100043218 NCBI Gene Model | MGI Sequence Detail 482 C57BL/6J ±  kb
transcript M38680 GenBank | ENA | DDBJ | MGI Sequence Detail 314 Not Specified  
polypeptide A0N8R0 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051287 T cell receptor variable region
References
more
  • Summaries
    All 9
  • Earliest
    J:9520 Yague J, et al., The structure of V alpha and J alpha segments in the mouse. Nucleic Acids Res. 1988 Dec 9;16(23):11355-64
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
10/22/2024
MGI 6.24
The Jackson Laboratory