Gene Expression Data
Assay Details
Assay
|
Reference:
|
J:185804
Larkins CE, et al., Defective Nodal and Cerl2 expression in the Arl13b(hnn) mutant node underlie its heterotaxia. Dev Biol. 2012 Jul 1;367(1):15-24
|
Assay type:
|
RNA in situ
|
MGI Accession ID:
|
MGI:7331345
|
Gene symbol:
|
Nodal
|
Gene name:
|
nodal growth differentiation factor
|
|
Results
|
Specimen
2A:
embryonic day 8.0
(more )
Note: 2-3 somites stage
Specimen
2A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
2-3 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: node |
Present |
|
2A
|
Left-sided asymmetry was seen in 49 out of 69 embryos (summarized in 5A).
|
TS12: lateral plate mesoderm |
Present |
Regionally restricted |
2A
|
Expressed in the left side (85 out of 104 embryos).
|
Specimen
2B:
embryonic day 8.0
(more )
Note: 4-5 somites stage
Specimen
2B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
4-5 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: node |
Present |
|
2B
|
Left-sided asymmetry was seen in 29 out of 39 embryos (summarized in 5A).
|
TS12: lateral plate mesoderm |
Present |
Regionally restricted |
2B
|
Expressed in the left side (67 out of 82 embryos).
|
Specimen
2C:
embryonic day 8.25
(more )
Note: 6-7 somites stage
Specimen
2C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 8.25
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
6-7 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: node |
Present |
|
2C
|
|
TS12: lateral plate mesoderm |
Absent |
|
2C
|
Expression in the left side was extinguished at the 6-7 somite stage (19 out of 28 embryos with no lateral plate mesoderm, summarized in 2D).
|
Specimen
2E:
(close )
Genetic Background:
|
C3.B6-Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
2-3 somites stage
|
Specimen
2F:
(close )
Genetic Background:
|
C3.B6-Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
4-5 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: node |
Present |
|
2F
|
Symmetric expression (11 out of 19 embryos, summarized in 5B).
|
TS12: lateral plate mesoderm |
Present |
Regionally restricted |
2F
|
Expressed in the right side (2 out of 31 embryos).
|
Specimen
2G:
(close )
Genetic Background:
|
C3.B6-Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn
|
Age:
|
embryonic day 8.25
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
6-7 somites stage
|
Specimen
2I:
(close )
Genetic Background:
|
C3.B6-Ift172wim
|
Mutant Allele(s):
|
Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
2-3 somites stage
|
Specimen
2J:
(close )
Genetic Background:
|
C3.B6-Ift172wim
|
Mutant Allele(s):
|
Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
4-5 somites stage
|
Specimen
2K:
(close )
Genetic Background:
|
C3.B6-Ift172wim
|
Mutant Allele(s):
|
Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
6-7 somites stage
|
Specimen
2M:
(close )
Genetic Background:
|
C3.B6-Ift172wim Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
2-3 somites stage
|
Specimen
2N:
(close )
Genetic Background:
|
C3.B6-Ift172wim Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
4-5 somites stage
|
Specimen
2O:
(close )
Genetic Background:
|
C3.B6-Ift172wim Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.25
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
6-7 somites stage
|
Specimen
5A:
embryonic day 7.5
(more )
Note: presomite stage
Specimen
5A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 7.5
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
presomite stage
|
Specimen
5B:
(close )
Genetic Background:
|
C3.B6-Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn
|
Age:
|
embryonic day 7.5
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
presomite stage
|
Specimen
5C:
(close )
Genetic Background:
|
C3.B6-Ift172wim
|
Mutant Allele(s):
|
Ift172wim/Ift172wim
|
Age:
|
embryonic day 7.5
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
presomite stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS11: node |
Present |
|
5C
|
Right-sided asymmetry was seen (5 out of 16 embryos).
|
TS11: lateral plate mesoderm |
Present |
|
5C
|
Bilateral expression, with more expression on the left side.
|
Specimen
7C:
embryonic day 8.25; Nodaltm1Rob/Nodal +
(more )
Note: 6-7 somites stage
Specimen
7C:
(close )
Genetic Background:
|
C3.129S-Nodaltm1Rob
|
Mutant Allele(s):
|
Nodaltm1Rob/Nodal+
|
Age:
|
embryonic day 8.25
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
6-7 somites stage
|
Specimen
7F:
(close )
Genetic Background:
|
C3.Cg-Arl13bhnn Nodaltm1Rob
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn Nodaltm1Rob/Nodal+
|
Age:
|
embryonic day 8.25
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
6-7 somites stage
|
Specimen
not shown:
embryonic day 7.5
(more )
Note: presomite stage
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 7.5
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
presomite stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS11: node |
Present |
|
|
19 out of 45 embryos with symmetric expression; 6 with right-sided asymmetry (summarized in 5A).
|
Specimen
not shown:
embryonic day 8.0
(more )
Note: 2-3 somites stage
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
2-3 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: lateral plate mesoderm |
Absent |
|
|
19 out of 104 embryos with no lateral plate mesoderm, summarized in 2D.
|
TS12: node |
Present |
|
|
15 out of 69 embryos with symmetric expression; 5 with right-sided asymmetry; 49 with left-sided asymmetry (summarized in 5A).
|
Specimen
not shown:
embryonic day 8.0
(more )
Note: 4-5 somites stage
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
4-5 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: lateral plate mesoderm |
Absent |
|
|
15 out of 82 embryos with no lateral plate mesoderm, summarized in 2D.
|
TS12: node |
Present |
|
|
9 out of 39 embryos with symmetric expression; 1 with right-sided asymmetry; 29 with left-sided asymmetry (summarized in 5A).
|
Specimen
not shown:
embryonic day 8.25
(more )
Note: 6-7 somites stage
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 8.25
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
6-7 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: lateral plate mesoderm |
Present |
Regionally restricted |
|
9 out of 28 embryos with expression only on the left side, summarized in 2D.
|
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn
|
Age:
|
embryonic day 7.5
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
presomite stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS11: node |
Present |
|
|
13 out of 31 embryos with left-sided asymmetry; 4 with right-sided asymmetry (summarized in 5B).
|
Specimen
not shown:
embryonic day 8.0; Arl13bhnn/ Arl13bhnn
(more )
Note: 2-3 somites stage
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
2-3 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: lateral plate mesoderm |
Present |
Regionally restricted |
|
There were 2 out of 30 embryos showed expression only on the left side; 2 on the right side (summarized in 2H).
|
TS12: node |
Present |
|
|
9 out of 26 embryos with left-sided asymmetry; 3 with right-sided asymmetry; 14 with symmetric expression (summarized in 5B).
|
Specimen
not shown:
embryonic day 8.0; Arl13bhnn/ Arl13bhnn
(more )
Note: 4-5 somites stage
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
4-5 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: lateral plate mesoderm |
Present |
|
|
There were 5 out of 31 embryos showed expression only on the left side; 2 on the right side; 7 on both sides (summarized in 2H).
|
TS12: node |
Present |
|
|
5 out of 19 embryos with left-sided asymmetry; 3 with right-sided asymmetry; 11 with symmetric expression (summarized in 5B).
|
Specimen
not shown:
embryonic day 8.25; Arl13bhnn/ Arl13bhnn
(more )
Note: 6-7 somites stage
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn
|
Age:
|
embryonic day 8.25
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
6-7 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: lateral plate mesoderm |
Present |
Regionally restricted |
|
There were 3 out of 17 embryos showed expression only on the left side; 3 on the right side (summarized in 2H).
|
Specimen
not shown:
embryonic day 8.25; Arl13bhnn/ Arl13bhnn
(more )
Note: 6-7 somites stage
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn
|
Age:
|
embryonic day 8.25
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
6-7 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: lateral plate mesoderm |
Absent |
|
|
There were 2 out of 17 embryos showed no expression (summarized in 2H).
|
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Ift172wim
|
Mutant Allele(s):
|
Ift172wim/Ift172wim
|
Age:
|
embryonic day 7.5
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
presomite stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS11: node |
Present |
|
|
2 out of 16 embryos with left-sided asymmetry; 9 with symmetric expression (summarized in 5C).
|
Specimen
not shown:
embryonic day 8.0; Ift172wim/ Ift172wim
(more )
Note: 2-3 somites stage
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Ift172wim
|
Mutant Allele(s):
|
Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
2-3 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: lateral plate mesoderm |
Absent |
|
|
There were 3 out of 20 embryos showed no expression (summarized in 2L).
|
TS12: node |
Present |
|
|
2 out of 11 embryos with left-sided asymmetry; 5 with right-sided asymmetry; 4 with symmetric expression (summarized in 5C).
|
Specimen
not shown:
embryonic day 8.0; Ift172wim/ Ift172wim
(more )
Note: 2-3 somites stage
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Ift172wim
|
Mutant Allele(s):
|
Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
2-3 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: lateral plate mesoderm |
Present |
Regionally restricted |
|
2 out of 20 embryos expressed only on the right side (summarized in 2L).
|
Specimen
not shown:
embryonic day 8.0; Ift172wim/ Ift172wim
(more )
Note: 4-5 somites stage
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Ift172wim
|
Mutant Allele(s):
|
Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
4-5 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: lateral plate mesoderm |
Present |
Regionally restricted |
|
2 out of 16 embryos expressed only on the left side (summarized in 2L).
|
TS12: node |
Present |
|
|
2 out of 8 embryos with left-sided asymmetry; 6 with symmetric expression (summarized in 5C).
|
Specimen
not shown:
embryonic day 8.0; Ift172wim/ Ift172wim
(more )
Note: 4-5 somites stage
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Ift172wim
|
Mutant Allele(s):
|
Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
4-5 somites stage
|
Specimen
not shown:
embryonic day 8.25; Ift172wim/ Ift172wim
(more )
Note: 6-7 somites stage
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Ift172wim
|
Mutant Allele(s):
|
Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.25
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
6-7 somites stage
|
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Ift172wim Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
2-3 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: lateral plate mesoderm |
Present |
Regionally restricted |
|
1 out of 4 embryos expressed only on the right side (summarized in 2P).
|
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Ift172wim Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
2-3 somites stage
|
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Ift172wim Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.0
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
4-5 somites stage
|
Structure |
Level |
Pattern |
Image |
Note |
TS12: lateral plate mesoderm |
Present |
Regionally restricted |
|
1 out of 3 embryos expressed only on the right side (summarized in 2P).
|
Specimen
not shown:
(close )
Genetic Background:
|
C3.B6-Ift172wim Arl13bhnn
|
Mutant Allele(s):
|
Arl13bhnn/Arl13bhnn Ift172wim/Ift172wim
|
Age:
|
embryonic day 8.25
|
Age Note:
|
Age assigned by curator based on morphological criteria supplied by authors.
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
6-7 somites stage
|
|