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Gene Expression Data
Assay Details
Assay
Reference: J:255320 Pederick DT, et al., Abnormal Cell Sorting Underlies the Unique X-Linked Inheritance of PCDH19 Epilepsy. Neuron. 2018 Jan 3;97(1):59-66.e5
Assay type: In situ reporter (knock in)
MGI Accession ID: MGI:7329910
Gene symbol: Pcdh19
Gene name: protocadherin 19
Reporter: HA
Antibody: anti-HA tag (C29F4) (#3724)
Detection system: Secondary antibody coupled to Texas Red
Results
Specimen 2D HA-FLAG/beta-Geo: embryonic day 14.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Note: Double labeled: green - Pcdh19 HA reporter; magenta - Pcdh19 beta-Geo reporter (assay MGI:7329912).
Structure Level Pattern Image Note
TS22: cerebral cortex intermediate zone Present Regionally restricted 2D HA-FLAG/beta-Geo X-GAL , 2D HA-FLAG/beta-Geo Protein expressing and null cells form a complementary and non-overlapping alternating pattern from the ventricular zone to the cortical plate.
TS22: cerebral cortex ventricular layer Present Regionally restricted 2D HA-FLAG/beta-Geo X-GAL , 2D HA-FLAG/beta-Geo Protein expressing and null cells form a complementary and non-overlapping alternating pattern from the ventricular zone to the cortical plate.
TS22: cortical plate Present Regionally restricted 2D HA-FLAG/beta-Geo X-GAL , 2D HA-FLAG/beta-Geo Protein expressing and null cells form a complementary and non-overlapping alternating pattern from the ventricular zone to the cortical plate.

Specimen 2D HA-FLAG/+: embryonic day 14.5; Pcdh19em1Pqt/Pcdh19+ (more )
Structure Level Pattern Image Note
TS22: cerebral cortex ventricular layer Present Regionally restricted 2D HA-FLAG/+ , 2D HA-FLAG/+ X-GAL There were small interspersed patches of HA-positive and HA-negative staining along the ventricle and overlying neural progenitors in the ventricular zone.
TS22: cerebral cortex intermediate zone Present 2D HA-FLAG/+ , 2D HA-FLAG/+ X-GAL
TS22: cortical plate Present 2D HA-FLAG/+ , 2D HA-FLAG/+ X-GAL

Specimen 2G HA-FLAG/+: postnatal day 7; Pcdh19em1Pqt/Pcdh19+ (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present 2G HA-FLAG/+

Specimen 2G HA-FLAG/beta-Geo: postnatal day 7; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Regionally restricted 2G HA-FLAG/beta-Geo There were small interspersed patches of HA-positive and HA-negative staining.

Specimen S2D: embryonic day 14.5; Pcdh19em1Pqt/Y (more )
Structure Level Pattern Image Note
TS22: cerebral cortex Present S2D

Specimen S2F left: postnatal day 7; Pcdh19em1Pqt/Y (more )
Structure Level Pattern Image Note
TS28: cortical layer I Present S2F left
TS28: cortical layer V Present S2F left

Specimen S2F right panel top left: postnatal day 7; Pcdh19em1Pqt/Y (more )
Note: Double labeled: green - Pcdh19; magenta - Bcl11b (assay MGI:7329937).
Structure Level Pattern Image Note
TS28: cortical layer I Present S2F right panel top right , S2F right panel top left
TS28: cortical layer V Present S2F right panel top right , S2F right panel top left

Specimen S2H 13.5: embryonic day 13.5; Pcdh19em1Pqt/Pcdh19+ (more )
Structure Level Pattern Image Note
TS21: cerebral cortex Present S2H E13.5

Specimen S2H 14.5 left: embryonic day 14.5; Pcdh19em1Pqt/Pcdh19+ (more )
Structure Level Pattern Image Note
TS22: cerebral cortex Present S2H E14.5 left

Specimen S2H 14.5 middle: embryonic day 14.5; Pcdh19em1Pqt/Pcdh19+ (more )
Structure Level Pattern Image Note
TS22: cerebral cortex Present S2H E14.5 middle

Specimen S2H 14.5 right: embryonic day 14.5; Pcdh19em1Pqt/Pcdh19+ (more )
Structure Level Pattern Image Note
TS22: cerebral cortex Present S2H E14.5 right

Specimen S2H 15.5: embryonic day 15.5; Pcdh19em1Pqt/Pcdh19+ (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Present S2H E15.5

Specimen S2I 13.5: embryonic day 13.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Structure Level Pattern Image Note
TS21: cerebral cortex Present Regionally restricted S2I E13.5 There are areas of segregated positive and negative cells.
TS21: ganglionic eminence Present Regionally restricted S2I E13.5 There are areas of segregated positive and negative cells.

Specimen S2I 14.5 left: embryonic day 14.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Structure Level Pattern Image Note
TS22: cerebral cortex Present Regionally restricted S2I E14.5 left There are areas of segregated positive and negative cells.
TS22: ganglionic eminence Present Regionally restricted S2I E14.5 left There are areas of segregated positive and negative cells.
TS22: hippocampus Present Regionally restricted S2I E14.5 left There are areas of segregated positive and negative cells.

Specimen S2I 14.5 middle: embryonic day 14.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Structure Level Pattern Image Note
TS22: cerebral cortex Present Regionally restricted S2I E14.5 middle There are areas of segregated positive and negative cells.
TS22: ganglionic eminence Present Regionally restricted S2I E14.5 middle There are areas of segregated positive and negative cells.
TS22: hippocampus Present Regionally restricted S2I E14.5 middle There are areas of segregated positive and negative cells.

Specimen S2I 14.5 right: embryonic day 14.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Structure Level Pattern Image Note
TS22: cerebral cortex Present Regionally restricted S2I E14.5 right There are areas of segregated positive and negative cells.
TS22: ganglionic eminence Present Regionally restricted S2I E14.5 right There are areas of segregated positive and negative cells.
TS22: hippocampus Present Regionally restricted S2I E14.5 right There are areas of segregated positive and negative cells.

Specimen S2I 15.5: embryonic day 15.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Present Regionally restricted S2I E15.5 There are areas of segregated positive and negative cells.
TS23: ganglionic eminence Present Regionally restricted S2I E15.5 There are areas of segregated positive and negative cells.
TS23: hippocampus Present Regionally restricted S2I E15.5 There are areas of segregated positive and negative cells.

Specimen S2J 13.5: embryonic day 13.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Note: Double labeled: green - Pcdh19 HA reporter; magenta - Pcdh19 beta-Geo reporter (assay MGI:7329912).
Structure Level Pattern Image Note
TS21: cerebral cortex Present Regionally restricted S2J E13.5 There are areas of segregated positive and negative cells.
TS21: ganglionic eminence Present Regionally restricted S2J E13.5 There are areas of segregated positive and negative cells.

Specimen S2J 14.5 left: embryonic day 14.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Note: Double labeled: green - Pcdh19 HA reporter; magenta - Pcdh19 beta-Geo reporter (assay MGI:7329912).
Structure Level Pattern Image Note
TS22: cerebral cortex Present Regionally restricted S2J E14.5 left There are areas of segregated positive and negative cells.
TS22: ganglionic eminence Present Regionally restricted S2J E14.5 left There are areas of segregated positive and negative cells.
TS22: hippocampus Present Regionally restricted S2J E14.5 left There are areas of segregated positive and negative cells.

Specimen S2J 14.5 middle: embryonic day 14.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Note: Double labeled: green - Pcdh19 HA reporter; magenta - Pcdh19 beta-Geo reporter (assay MGI:7329912).
Structure Level Pattern Image Note
TS22: cerebral cortex Present Regionally restricted S2J E14.5 middle There are areas of segregated positive and negative cells.
TS22: ganglionic eminence Present Regionally restricted S2J E14.5 middle There are areas of segregated positive and negative cells.
TS22: hippocampus Present Regionally restricted S2J E14.5 middle There are areas of segregated positive and negative cells.

Specimen S2J 14.5 right: embryonic day 14.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Note: Double labeled: green - Pcdh19 HA reporter; magenta - Pcdh19 beta-Geo reporter (assay MGI:7329912).
Structure Level Pattern Image Note
TS22: cerebral cortex Present Regionally restricted S2J E14.5 right There are areas of segregated positive and negative cells.
TS22: ganglionic eminence Present Regionally restricted S2J E14.5 right There are areas of segregated positive and negative cells.
TS22: hippocampus Present Regionally restricted S2J E14.5 right There are areas of segregated positive and negative cells.

Specimen S2J 15.5: embryonic day 15.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Note: Double labeled: green - Pcdh19 HA reporter; magenta - Pcdh19 beta-Geo reporter (assay MGI:7329912).
Structure Level Pattern Image Note
TS23: cerebral cortex Present Regionally restricted S2J E15.5 There are areas of segregated positive and negative cells.
TS23: ganglionic eminence Present Regionally restricted S2J E15.5 There are areas of segregated positive and negative cells.
TS23: hippocampus Present Regionally restricted S2J E15.5 There are areas of segregated positive and negative cells.

Specimen S3A left: embryonic day 10.5; Pcdh19em1Pqt/Y (more )
Note: Double labeled with phalloidin (magenta).
Structure Level Pattern Image Note
TS17: brain ventricular layer Present S3A left top , S3A left bottom Expression is at all cell-cell boundaries.

Specimen S3A middle: embryonic day 10.5; Pcdh19em1Pqt/Pcdh19+ (more )
Note: Double labeled with phalloidin (magenta).
Structure Level Pattern Image Note
TS17: brain ventricular layer Present Regionally restricted S3A middle top , S3A middle bottom Expression is at boundaries between HA-positive and HA-negative cells.

Specimen S3A right: embryonic day 10.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Note: Double labeled with phalloidin (magenta).
Structure Level Pattern Image Note
TS17: brain ventricular layer Present Regionally restricted S3A right top , S3A right bottom Expression is absent at boundaries between HA-positive and HA-negative cells.

Specimen S3C: embryonic day 8.5; Pcdh19em1Pqt/Y (more )
Note: Double labeled: green - Pcdh19; magenta - Sox3 (assay MGI:7329952).
Structure Level Pattern Image Note
TS13: surface ectoderm Present S3C left , S3C right
TS13: neural ectoderm Absent S3C right , S3C left

Specimen S3D top: embryonic day 9.5; Pcdh19em1Pqt/Y (more )
Note: Double labeled: green - Pcdh19; magenta - Sox3 (assay MGI:7329952).
Structure Level Pattern Image Note
TS15: telencephalon Present S3D top left , S3D top

Specimen S3D middle: embryonic day 9.5; Pcdh19em1Pqt/Pcdh19+ (more )
Note: Double labeled: green - Pcdh19; magenta - Sox3 (assay MGI:7329952).
Structure Level Pattern Image Note
TS15: telencephalon Present S3D middle , S3D middle left

Specimen S3D bottom: embryonic day 9.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Note: Double labeled: green - Pcdh19; magenta - Sox3 (assay MGI:7329952).
Structure Level Pattern Image Note
TS15: telencephalon Present S3D bottom left , S3D bottom

Specimen S3E top: embryonic day 10.5; Pcdh19em1Pqt/Y (more )
Note: Double labeled: green - Pcdh19; magenta - Sox3 (assay MGI:7329952).
Structure Level Pattern Image Note
TS17: telencephalon Present S3E top left , S3E top

Specimen S3E middle: embryonic day 10.5; Pcdh19em1Pqt/Pcdh19+ (more )
Note: Double labeled: green - Pcdh19; magenta - Sox3 (assay MGI:7329952).
Structure Level Pattern Image Note
TS17: telencephalon Present S3E middle left , S3E middle

Specimen S3E bottom: embryonic day 10.5; Pcdh19tm1Tac/Pcdh19em1Pqt (more )
Note: Double labeled: green - Pcdh19; magenta - Sox3 (assay MGI:7329952).
Structure Level Pattern Image Note
TS17: telencephalon Present Regionally restricted S3E bottom , S3E bottom left There are areas of segregated positive and negative cells.


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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory