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Cdr1os Gene Detail
Summary
  • Symbol
    Cdr1os
  • Name
    cerebellar degeneration related antigen 1, opposite strand
  • Synonyms
    C230004F18Rik, Cdr1as
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5637821
    NCBI Gene: 331424
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    ChrX:60159984-60247391 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 34.19 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    242 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5637821
 lncRNA gene ChrX:60159984-60247391 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015781
 unclassified non-coding RNA gene ChrX:56523227-56584373 (+)
A/J MGP_AJ_G0015758
 unclassified non-coding RNA gene ChrX:56717363-56780495 (+)
AKR/J MGP_AKRJ_G0015721
 unclassified non-coding RNA gene ChrX:58233376-58297154 (+)
BALB/cJ MGP_BALBcJ_G0015719
 unclassified non-coding RNA gene ChrX:56056796-56121518 (+)
C3H/HeJ MGP_C3HHeJ_G0015539
 unclassified non-coding RNA gene ChrX:57065752-57134221 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016173
 unclassified non-coding RNA gene ChrX:58025500-58093490 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013897
 unclassified non-coding RNA gene ChrX:56507537-56568072 (+)
CAST/EiJ MGP_CASTEiJ_G0015094
 unclassified non-coding RNA gene ChrX:42838397-42900667 (+)
CBA/J MGP_CBAJ_G0015519
 unclassified non-coding RNA gene ChrX:59763007-59832209 (+)
DBA/2J MGP_DBA2J_G0015617
 unclassified non-coding RNA gene ChrX:56275344-56336161 (+)
FVB/NJ MGP_FVBNJ_G0015622
 unclassified non-coding RNA gene ChrX:55813059-55872990 (+)
LP/J MGP_LPJ_G0015699
 unclassified non-coding RNA gene ChrX:57099635-57159975 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015645
 unclassified non-coding RNA gene ChrX:61344759-61406688 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016217
 unclassified non-coding RNA gene ChrX:56560514-56621430 (+)
PWK/PhJ MGP_PWKPhJ_G0014876
 unclassified non-coding RNA gene ChrX:40992906-41053981 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014664
 unclassified non-coding RNA gene ChrX:43686202-43748890 (+)
WSB/EiJ MGP_WSBEiJ_G0015198
 unclassified non-coding RNA gene ChrX:56009035-56072142 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 3 alleles in 3 genetic backgrounds
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice hemyzygous or homozygous for a knock-out allele are born in expected Mendelian frequency.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    859
  • Tissues
    36
  • cDNA Data
    3
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    44
  • RefSeq
    9
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 331424 NCBI Gene Model | MGI Sequence Detail 87408 C57BL/6J ±  kb
transcript NR_173098 RefSeq | MGI Sequence Detail 19669 C57BL/6  
polypeptide Q8C4I6 UniProt | EBI | MGI Sequence Detail 101 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 6
    Genomic 2
    cDNA 3
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:3041217
References
more
  • Summaries
    All 21
    Developmental Gene Expression 3
    Phenotypes 4
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:337291 Chen XJ, et al., Abundant Neural circRNA Cdr1as Is Not Indispensable for Retina Maintenance. Front Cell Dev Biol. 2020;8:565543
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory