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Vamp9 Gene Detail
Summary
  • Symbol
    Vamp9
  • Name
    vesicle-associated membrane protein 9
  • Synonyms
    Gm35911
Location &
Maps
more
  • Sequence Map
    Chr5:100054113-100098951 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1138 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5595070
 protein coding gene Chr5:100054101-100099508 (+)
129S1/SvImJ ENSMUSG00200005978
 protein coding gene Chr5:93795082-93839911 (+)
A/J ENSMUSG00195032847
 protein coding gene Chr5:93339346-93390860 (+)
AKR/J ENSMUSG00220031368
 protein coding gene Chr5:92808817-92860335 (+)
BALB/cJ ENSMUSG00180029733
 protein coding gene Chr5:93495475-93546986 (+)
C3H/HeJ ENSMUSG00175029782
 protein coding gene Chr5:95600163-95651669 (+)
C57BL/6NJ ENSMUSG00215012388
 protein coding gene Chr5:93438131-93482975 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006105
 lincRNA gene Chr5:92864924-92875641 (+)
CAST/EiJ ENSTCUG00005022237
 protein coding gene Chr5:92843247-92878965 (+)
CBA/J ENSMUSG00210033474
 protein coding gene Chr5:94350487-94401996 (+)
DBA/2J ENSMUSG00185034630
 protein coding gene Chr5:97268822-97320331 (+)
FVB/NJ ENSMUSG00205032787
 protein coding gene Chr5:93245605-93297119 (+)
JF1/MsJ ENSUMUG00000040491
 protein coding gene Chr5:100279494-100315874 (+)
LP/J ENSMUSG00230023930
 protein coding gene Chr5:101336800-101381628 (+)
NOD/ShiLtJ ENSMUSG00190020510
 protein coding gene Chr5:93263136-93307976 (+)
NZO/HlLtJ ENSMUSG00225012344
 protein coding gene Chr5:109084689-109136197 (+)
PWK/PhJ ENSLUMG00010013783
 protein coding gene Chr5:92402640-92439133 (+)
SPRET/EiJ ENSMSPG00010024070
 protein coding gene Chr5:95298512-95340037 (+)
WSB/EiJ ENSIUOG00005028098
 protein coding gene Chr5:96000941-96043646 (+)



Homology
more
  • Human Ortholog
    VAMP9P, vesicle associated membrane protein 9, pseudogene
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    VAMP9P, vesicle associated membrane protein 9, pseudogene
  • Links
    NCBI Gene ID: 105377307

  • Chr Location
    chr4:82284971-82340013 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    3 involving Vamp9
  • Find Mice (IMSR)
    7 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    40
  • RefSeq
    8
  • UniProt
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000105078 Ensembl Gene Model | MGI Sequence Detail 44839 C57BL/6J ±  kb
transcript ENSMUST00000198837 Ensembl | MGI Sequence Detail 677 Not Applicable  
polypeptide ENSMUSP00000148490 Ensembl | MGI Sequence Detail 214 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR010908 Longin domain
    IPR011012 Longin-like domain superfamily
    IPR051097 Synaptobrevin-like vesicular transport protein
    IPR042855 v-SNARE, coiled-coil homology domain
Other
Accession IDs
less
MGI:6117765
References
more
  • Summaries
    All 15
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory