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Gm29642 Gene Detail
Summary
  • Symbol
    Gm29642
  • Name
    predicted gene 29642
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5580348
    NCBI Gene: 102631685
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:25063312-25086887 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    125 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5580348
 lncRNA gene Chr9:25063312-25156876 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007410
 lincRNA gene Chr9:22566416-22586542 (+)
A/J MGP_AJ_G0007406
 lincRNA gene Chr9:22085014-22107412 (+)
AKR/J MGP_AKRJ_G0007378
 lincRNA gene Chr9:22511135-22531777 (+)
BALB/cJ MGP_BALBcJ_G0007384
 lincRNA gene Chr9:21986636-22008572 (+)
C3H/HeJ MGP_C3HHeJ_G0007328
 lincRNA gene Chr9:22846395-22869217 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007555
 lincRNA gene Chr9:23432132-23455797 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006746
 lincRNA gene Chr9:21035576-21057481 (+)
CAST/EiJ MGP_CASTEiJ_G0007231
 lincRNA gene Chr9:22711123-22731520 (+)
CBA/J MGP_CBAJ_G0007310
 lincRNA gene Chr9:24298889-24322765 (+)
DBA/2J MGP_DBA2J_G0007333
 lincRNA gene Chr9:22065094-22087686 (+)
FVB/NJ MGP_FVBNJ_G0007354
 lincRNA gene Chr9:21560046-21582878 (+)
LP/J MGP_LPJ_G0007415
 lincRNA gene Chr9:22744540-22766095 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007331
 lincRNA gene Chr9:25917804-25940771 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007558
 lincRNA gene Chr9:22501693-22522226 (+)
PWK/PhJ MGP_PWKPhJ_G0007172
 lincRNA gene Chr9:22010820-22031562 (+)
SPRET/EiJ MGP_SPRETEiJ_G0007079
 lincRNA gene Chr9:22554454-22576475 (+)
WSB/EiJ MGP_WSBEiJ_G0007291
 lincRNA gene Chr9:22225272-22246607 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000100002 Ensembl Gene Model | MGI Sequence Detail 23576 C57BL/6J ±  kb
transcript ENSMUST00000242709 Ensembl | MGI Sequence Detail 3056 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 7
    Phenotypes 2
  • Earliest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory