About   Help   FAQ
Igkv5-43 Gene Detail
Summary
  • Symbol
    Igkv5-43
  • Name
    immunoglobulin kappa chain variable 5-43
Location &
Maps
more
  • Sequence Map
    Chr6:69800339-69800895 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 31.63 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    117 from dbSNP Build 142
  • Strain Annotations
    17
  • RFLP
    5
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4943320
 gene segment Chr6:69800339-69800927 (-)
129S1/SvImJ ENSMUSG00200012039
 gene segment Chr6:66706834-66707422 (-)
A/J ENSMUSG00195044594
 gene segment Chr6:66459762-66460350 (-)
AKR/J ENSMUSG00220046986
 gene segment Chr6:65530016-65530599 (-)
BALB/cJ ENSMUSG00180038578
 gene segment Chr6:66815632-66816220 (-)
C3H/HeJ ENSMUSG00175013537
 gene segment Chr6:110634099-110634687 (+)
C57BL/6NJ ENSMUSG00215043645
 gene segment Chr6:66790187-66790775 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005036396
 gene segment Chr6:66936585-66937173 (-)
CBA/J ENSMUSG00210040492
 gene segment Chr6:66612996-66613584 (-)
DBA/2J ENSMUSG00185043266
 gene segment Chr6:67178214-67178802 (-)
FVB/NJ ENSMUSG00205034011
 gene segment Chr6:66156682-66157270 (-)
JF1/MsJ ENSUMUG00000045745
 gene segment Chr6:66199499-66200082 (-)
LP/J ENSMUSG00230029970
 gene segment Chr6:68298514-68299102 (-)
NOD/ShiLtJ ENSMUSG00190044077
 gene segment Chr6:66140257-66140840 (-)
NZO/HlLtJ ENSMUSG00225021074
 gene segment Chr6:70272396-70272984 (-)
PWK/PhJ no annotation
SPRET/EiJ ENSMSPG00010026723
 gene segment Chr6:67643510-67644099 (-)
WSB/EiJ ENSIUOG00005025371
 gene segment Chr6:67438741-67439330 (-)



Homology
more
  • Human Ortholog
    IGKV6-21, immunoglobulin kappa variable 6-21 (non-functional)
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGKV6-21, immunoglobulin kappa variable 6-21 (non-functional)
  • Synonyms
    A26, IGKV621
  • Links
    NCBI Gene ID: 28906
    UniProt: A0A0C4DH24

  • Chr Location
    2p11.2; chr2:89159751-89160366 (-)  GRCh38
  • Human Ortholog
    IGKV6D-21, immunoglobulin kappa variable 6D-21 (non-functional)
  • Synonyms
    A10, IGKV6D21
  • Links
    NCBI Gene ID: 28870
    UniProt: A0A0A0MT36

  • Chr Location
    2p11.2; chr2:90021567-90022185 (+)  GRCh38
  • Human Ortholog
    IGKV6D-41, immunoglobulin kappa variable 6D-41 (non-functional)
  • Synonyms
    A14
  • Links
    NCBI Gene ID: 28869
    UniProt: A0A0C4DH26

  • Chr Location
    2p11.2; chr2:90069662-90070240 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 381783 NCBI Gene Model | MGI Sequence Detail 557 C57BL/6J ±  kb
transcript M16162 GenBank | ENA | DDBJ | MGI Sequence Detail 420 Not Specified  
polypeptide A0A0B4J1J2 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 20
    Genomic 14
    cDNA 3
    Primer pair 1
    Other 2
Other
Accession IDs
less
MGD-MRK-11312, MGI:96509
References
more
  • Summaries
    All 20
    Gene Ontology 2
  • Earliest
    J:27711 Nishioka Y, et al., Organization and complete sequence of identical embryonic and plasmacytoma kappa V-region genes. J Biol Chem. 1980 Apr 25;255(8):3691-4
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory