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Ighv5-9 Gene Detail
Summary
  • Symbol
    Ighv5-9
  • Name
    immunoglobulin heavy variable 5-9
  • Synonyms
    Gm16949
  • Feature Type
    gene segment
  • IDs
    MGI:4439873
    NCBI Gene: 544896
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:113625391-113625848 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 62.15 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    61 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439873
 gene segment Chr12:113625389-113625913 (-)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0000059
 gene segment Chr12:119777338-119777862 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000033
 gene segment Chr12:108383739-108384267 (-)
CAST/EiJ MGP_CASTEiJ_G0000053
 gene segment Chr12:110451381-110477310 (-)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0000047
 gene segment Chr12:111305266-111305796 (-)
FVB/NJ MGP_FVBNJ_G0000043
 gene segment Chr12:110052576-110053100 (-)
LP/J MGP_LPJ_G0000050
 gene segment Chr12:116249426-116250083 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0000047
 gene segment Chr12:127499242-127499766 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000056
 gene segment Chr12:114537603-114538133 (-)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0000040
 gene segment Chr12:108696669-108697657 (-)
WSB/EiJ MGP_WSBEiJ_G0000047
 gene segment Chr12:115580676-115581206 (+)



Homology
more
  • Human Ortholog
    IGHV3-13, immunoglobulin heavy variable 3-13
  • Vertebrate Orthologs
    20
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGHV3-13, immunoglobulin heavy variable 3-13
  • Synonyms
    IGHV313
  • Links
    NCBI Gene ID: 28449
    UniProt: P01766

  • Chr Location
    14q32.33; chr14:106129540-106130072 (-)  GRCh38
  • Human Ortholog
    IGHV3-20, immunoglobulin heavy variable 3-20
  • Synonyms
    IGHV320, VH
  • Links
    NCBI Gene ID: 28445
    UniProt: A0A0C4DH32

  • Chr Location
    14q32.33; chr14:106210936-106211453 (-)  GRCh38
  • Human Ortholog
    IGHV3-23, immunoglobulin heavy variable 3-23
  • Synonyms
    DP47, IGHV323, V3-23, VH26
  • Links
    NCBI Gene ID: 28442
    UniProt: P01764

  • Chr Location
    14q32.33; chr14:106268606-106269140 (-)  GRCh38
  • Human Ortholog
    IGHV3-30, immunoglobulin heavy variable 3-30
  • Synonyms
    IGHV330, VH
  • Links
    NCBI Gene ID: 28439
    UniProt: P01768

  • Chr Location
    14q32.33; chr14:106335080-106335613 (-)  GRCh38
  • Human Ortholog
    IGHV3-30-3, immunoglobulin heavy variable 3-30-3
  • Synonyms
    IGHV3-3, IGHV3303
  • Links
    NCBI Gene ID: 57290
    UniProt: P0DP02

  • Chr Location
    14q32.33
  • Human Ortholog
    IGHV3-30-5, immunoglobulin heavy variable 3-30-5
  • Synonyms
    IGHV3-3, IGHV3305
  • Links
    NCBI Gene ID: 89770
    UniProt: P0DP03

  • Chr Location
    14q32.33
  • Human Ortholog
    IGHV3-33, immunoglobulin heavy variable 3-33
  • Synonyms
    IGHV333, VH
  • Links
    NCBI Gene ID: 28434
    UniProt: P01772

  • Chr Location
    14q32.33; chr14:106359791-106360324 (-)  GRCh38
  • Human Ortholog
    IGHV3-35, immunoglobulin heavy variable 3-35 (non-functional)
  • Synonyms
    IGHV335, VH
  • Links
    NCBI Gene ID: 28432
    UniProt: A0A0C4DH35

  • Chr Location
    14q32.33; chr14:106389390-106389858 (-)  GRCh38
  • Human Ortholog
    IGHV3-38, immunoglobulin heavy variable 3-38 (non-functional)
  • Synonyms
    IGHV338, VH
  • Links
    NCBI Gene ID: 28429
    UniProt: A0A0C4DH36

  • Chr Location
    14q32.33; chr14:106410493-106411021 (-)  GRCh38
  • Human Ortholog
    IGHV3-38-3, immunoglobulin heavy variable 3-38-3 (non-functional)
  • Synonyms
    IGH, IGHV3D, IGHV3-D
  • Links
    NCBI Gene ID: 28404
    UniProt: P0DTE1

  • Chr Location
    14q32.33
  • Human Ortholog
    IGHV3-43, immunoglobulin heavy variable 3-43
  • Synonyms
    IGHV343, VH
  • Links
    NCBI Gene ID: 28426
    UniProt: A0A0B4J1X8

  • Chr Location
    14q32.33; chr14:106470263-106470800 (-)  GRCh38
  • Human Ortholog
    IGHV3-53, immunoglobulin heavy variable 3-53
  • Synonyms
    IGHV353, VH
  • Links
    NCBI Gene ID: 28420
    UniProt: P01767

  • Chr Location
    14q32.33; chr14:106592676-106593347 (-)  GRCh38
  • Human Ortholog
    IGHV3-64, immunoglobulin heavy variable 3-64
  • Synonyms
    IGHV364, VH
  • Links
    NCBI Gene ID: 28414
    UniProt: A0A075B6Q5

  • Chr Location
    14q32.33; chr14:106657723-106658258 (-)  GRCh38
  • Human Ortholog
    IGHV3-64D, immunoglobulin heavy variable 3-64D
  • Links
    NCBI Gene ID: 102723170
    UniProt: A0A0J9YX35

  • Chr Location
    14q32.33; chr14:106088122-106088573 (-)  GRCh38
  • Human Ortholog
    IGHV3-66, immunoglobulin heavy variable 3-66
  • Synonyms
    IGHV366, VH
  • Links
    NCBI Gene ID: 28412
    UniProt: A0A0C4DH42

  • Chr Location
    14q32.33; chr14:106675015-106675544 (-)  GRCh38
  • Human Ortholog
    IGHV3-74, immunoglobulin heavy variable 3-74
  • Synonyms
    IGHV374, VH
  • Links
    NCBI Gene ID: 28408
    UniProt: A0A0B4J1X5

  • Chr Location
    14q32.33; chr14:106810440-106811131 (-)  GRCh38
  • Human Ortholog
    IGHV3-9, immunoglobulin heavy variable 3-9
  • Synonyms
    IGHV39, VH
  • Links
    NCBI Gene ID: 28451
    UniProt: P01782

  • Chr Location
    14q32.33
  • Human Ortholog
    IGHV3OR16-10, immunoglobulin heavy variable 3/OR16-10 (non-functional)
  • Synonyms
    IGHV3OR1610
  • Links
    NCBI Gene ID: 28306

  • Chr Location
    16p11.2; chr16:32995048-32995505 (+)  GRCh38
  • Human Ortholog
    IGHV3OR16-8, immunoglobulin heavy variable 3/OR16-8 (non-functional)
  • Synonyms
    IGHV3OR168, IGHV3/OR16-8
  • Links
    NCBI Gene ID: 388255

  • Chr Location
    16p11.2; chr16:33009124-33009646 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 544896 NCBI Gene Model | MGI Sequence Detail 458 C57BL/6J ±  kb
transcript X51721 GenBank | ENA | DDBJ | MGI Sequence Detail 480 BALB/c, Ag8.653 myeloma*  
polypeptide A2NV20 UniProt | EBI | MGI Sequence Detail 138 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR003599 Immunoglobulin subtype
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 11
    Gene Ontology 1
  • Earliest
    J:7258 Ollo R, et al., Structural relationships among mouse and human immunoglobulin VH genes in the subgroup III. Nucleic Acids Res. 1983 Nov 25;11(22):7887-97
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory