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Igkv12-41 Gene Detail
Summary
  • Symbol
    Igkv12-41
  • Name
    immunoglobulin kappa chain variable 12-41
  • Synonyms
    Gm16848
  • Feature Type
    gene segment
  • IDs
    MGI:4439772
    NCBI Gene: 619960
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:69835404-69835868 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 31.65 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    20 from dbSNP Build 142
  • Strain Annotations
    7
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439772
 gene segment Chr6:69835404-69835868 (-)
129S1/SvImJ MGP_129S1SvImJ_G0000157
 gene segment Chr6:70205123-70205587 (-)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0000196
 gene segment Chr6:71966605-71967069 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0000130
 gene segment Chr6:66290081-66290545 (-)
LP/J MGP_LPJ_G0000161
 gene segment Chr6:70058101-70058565 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0000142
 gene segment Chr6:78476945-78477412 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000178
 gene segment Chr6:69314372-69314836 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    IGKV1-13, immunoglobulin kappa variable 1-13
  • Vertebrate Orthologs
    10
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGKV1-13, immunoglobulin kappa variable 1-13
  • Synonyms
    IGKV113, L18
  • Links
    NCBI Gene ID: 28939
    UniProt: P0DP09

  • Chr Location
    2p11.2; chr2:89045990-89046466 (-)  GRCh38
  • Human Ortholog
    IGKV1-33, immunoglobulin kappa variable 1-33
  • Synonyms
    IGKV133, O18
  • Links
    NCBI Gene ID: 28933

  • Chr Location
    2p11.2; chr2:89268001-89268506 (-)  GRCh38
  • Human Ortholog
    IGKV1-39, immunoglobulin kappa variable 1-39
  • Synonyms
    IGKV139, O12, O12a
  • Links
    NCBI Gene ID: 28930
    UniProt: P01597

  • Chr Location
    2p11.2; chr2:89319625-89320146 (-)  GRCh38
  • Human Ortholog
    IGKV1-8, immunoglobulin kappa variable 1-8
  • Synonyms
    IGKV18, L9
  • Links
    NCBI Gene ID: 28942
    UniProt: A0A0C4DH67

  • Chr Location
    2p11.2; chr2:88992409-88992931 (-)  GRCh38
  • Human Ortholog
    IGKV1D-13, immunoglobulin kappa variable 1D-13
  • Synonyms
    IGKV1D13, L18
  • Links
    NCBI Gene ID: 28902
    UniProt: A0A0B4J2D9

  • Chr Location
    2p11.2; chr2:90154073-90154574 (+)  GRCh38
  • Human Ortholog
    IGKV1D-33, immunoglobulin kappa variable 1D-33
  • Synonyms
    IGKV1D33, O8
  • Links
    NCBI Gene ID: 28896
    UniProt: P01593

  • Chr Location
    2p11.2; chr2:89913982-89914545 (+)  GRCh38
  • Human Ortholog
    IGKV1D-39, immunoglobulin kappa variable 1D-39
  • Synonyms
    IGKV1D39, O2
  • Links
    NCBI Gene ID: 28893
    UniProt: P04432

  • Chr Location
    2p11.2; chr2:89862482-89862981 (+)  GRCh38
  • Human Ortholog
    IGKV1D-43, immunoglobulin kappa variable 1D-43
  • Synonyms
    IGKV1D43, L23, L23a
  • Links
    NCBI Gene ID: 28891
    UniProt: A0A0B4J1Z2

  • Chr Location
    2p11.2; chr2:90209873-90210529 (+)  GRCh38
  • Human Ortholog
    IGKV1D-8, immunoglobulin kappa variable 1D-8
  • Synonyms
    IGKV1D8, L24, L24a
  • Links
    NCBI Gene ID: 28904
    UniProt: A0A087WSZ0

  • Chr Location
    2p11.2; chr2:90220727-90221384 (+)  GRCh38
  • Human Ortholog
    IGKV1OR2-108, immunoglobulin kappa variable 1/OR2-108 (non-functional)
  • Synonyms
    IGKV1OR2108, IGO1
  • Links
    NCBI Gene ID: 28862

  • Chr Location
    2q12-q14; chr2:113406396-113406872 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    15
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 619960 NCBI Gene Model | MGI Sequence Detail 465 C57BL/6J ±  kb
polypeptide P01635 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 3
    Genomic 3
References
more
  • Summaries
    All 9
  • Earliest
    J:28601 Seidman JG, et al., Multiple related immunoglobulin variable-region genes identified by cloning and sequence analysis. Proc Natl Acad Sci U S A. 1978 Aug;75(8):3881-5
  • Latest
    J:27711 Nishioka Y, et al., Organization and complete sequence of identical embryonic and plasmacytoma kappa V-region genes. J Biol Chem. 1980 Apr 25;255(8):3691-4
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory