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n-R5s88 Gene Detail
Summary
  • Symbol
    n-R5s88
  • Name
    nuclear encoded rRNA 5S 88
Location &
Maps
more
  • Sequence Map
    Chr9:102005087-102005204 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 54.22 cM
Strain
Comparison
more
  • SNPs within 2kb
    22 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4421936
 rRNA gene Chr9:102005086-102005204 (+)
129S1/SvImJ MGP_129S1SvImJ_G0036755
 rRNA gene Chr9:103682709-103682826 (+)
A/J MGP_AJ_G0036743
 rRNA gene Chr9:99961288-99961405 (+)
AKR/J MGP_AKRJ_G0036692
 rRNA gene Chr9:102433268-102433385 (+)
BALB/cJ MGP_BALBcJ_G0036733
 rRNA gene Chr9:99672782-99672899 (+)
C3H/HeJ MGP_C3HHeJ_G0036423
 rRNA gene Chr9:102845311-102845428 (+)
C57BL/6NJ MGP_C57BL6NJ_G0037248
 rRNA gene Chr9:106584529-106584646 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0034319
 rRNA gene Chr9:97564304-97564421 (+)
CAST/EiJ MGP_CASTEiJ_G0035611
 rRNA gene Chr9:102644832-102644949 (+)
CBA/J MGP_CBAJ_G0036396
 rRNA gene Chr9:110314442-110314559 (+)
DBA/2J MGP_DBA2J_G0036571
 rRNA gene Chr9:99462526-99462643 (+)
FVB/NJ MGP_FVBNJ_G0036527
 rRNA gene Chr9:98258910-98259027 (+)
LP/J MGP_LPJ_G0036619
 rRNA gene Chr9:103882905-103883022 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0036526
 rRNA gene Chr9:112158427-112158544 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0037362
 rRNA gene Chr9:102678763-102678880 (+)
PWK/PhJ MGP_PWKPhJ_G0035308
 rRNA gene Chr9:99694832-99694949 (+)
SPRET/EiJ MGP_SPRETEiJ_G0035123
 rRNA gene Chr9:102716271-102716388 (+)
WSB/EiJ MGP_WSBEiJ_G0035812
 rRNA gene Chr9:102555892-102556009 (+)



Homology
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Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    21
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000065107 Ensembl Gene Model | MGI Sequence Detail 118 C57BL/6J ±  kb
transcript ENSMUST00000083173 Ensembl | MGI Sequence Detail 118 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 4
  • Earliest
    J:156847 Gardner PP, et al., Rfam: updates to the RNA families database. Nucleic Acids Res. 2009 Jan;37(Database issue):D136-40
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory