About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:31336 Goodrich LV, et al., Conservation of the hedgehog/patched signaling pathway from flies to mice: induction of a mouse patched gene by Hedgehog. Genes Dev. 1996 Feb 1;10(3):301-12
Assay type: RNA in situ
MGI Accession ID: MGI:3833903
Gene symbol: Ptch1
Gene name: patched 1
Results
Specimen 7.5 dpc not shown: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: embryo Present Regionally restricted Expression first detected faintly along the anterior axis.

Specimen 3A: embryonic day 8.0 (more )
Structure Level Pattern Image Note
TS12: head Strong Regionally restricted 3A Intense expression down the middle of headfolds.
TS12: neural ectoderm Weak Regionally restricted 3A Weak expression in the neuroepithelium extending to the node.

Specimen 3C: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: neural ectoderm Present Regionally restricted 3C Expression along midline of neural tube.
TS13: foregut diverticulum Present 3C Expression in the foregut.

Specimen 3E: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: future brain Present Regionally restricted 3E Two transverse domains of expression in the developing brain.
TS13: lateral plate mesoderm Strong Regionally restricted 3E High levels of expression in ventral halves of somites and lateral plate mesoderm.
TS13: somite Strong Regionally restricted 3E High levels of expression in ventral halves of somites and lateral plate mesoderm.
TS13: trunk unsegmented mesenchyme Weak Regionally restricted 3E Low levels of expression in ventral presomitic mesoderm.

Specimen 3G: embryonic day 9.0 (more )
Structure Level Pattern Image Note
TS14: floor plate Weak 3G Authors report that expression begins to disappear from the floor plate.
TS14: rhombomere Present 3G
TS14: branchial arch Present 3G
TS14: foregut Present 3G
TS14: hindgut diverticulum Present 3G

Specimen 9 dpc not shown: embryonic day 9.0 (more )
Structure Level Pattern Image Note
TS14: gut epithelium Present Expression in both endoderm and mesoderm.
TS14: gut mesenchyme Present Expression in both endoderm and mesoderm.

Specimen 3G inset: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: rhombomere Present Regionally restricted 3G inset Strong stripes of expression extending dorsolaterally within each rhombomere.

Specimen 3I: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: brain Present Regionally restricted 3I Expression in the brain largely confined to the ventral midline, except for a region in the diencephalon.
TS17: diencephalon Present Regionally restricted 3I Two ventrolateral stripes of expression on either side of the midline.
TS17: midbrain Present Regionally restricted 3I Authors report ventrolateral expression in the midbrain.
TS17: neural tube Present Regionally restricted 3I Widespread expression in the spinal cord, extending up the sides of the neural tube.
TS17: floor plate Absent 3I No expression in the floor plate along the entire anterior-posterior axis.
TS17: 1st branchial arch mandibular component Present 3I
TS17: branchial arch Present 3I
TS17: forelimb bud Present Regionally restricted 3I Expression on posterior edge of forelimb bud, stronger and broader than that seen at E9.5.

Specimen 4A: embryonic day 8.0 (more )
Structure Level Pattern Image Note
TS12: neural tube floor plate Strong Regionally restricted 4A In the presomitic region, strong expression in the ventral-most cells of the neural tube.
TS12: trunk unsegmented mesenchyme Weak Regionally restricted 4A Weak expression in the ventral presomitic mesoderm.

Specimen 4C: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: tail neural tube Present Regionally restricted 4C In the tail region, gradient of expression in the neural tube.
TS15: tail neural tube floor plate Strong Regionally restricted 4C Highest levels in the floor plate adjacent to the notochord.

Specimen 4E: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: trunk somite Strong Regionally restricted 4E In the midgut region, strongest expression in cells close to the notochord.
TS15: trunk sclerotome Weak 4E Lower expression levels in cells more distant from the notochord.
TS15: neural tube Present Regionally restricted 4E Expression persists in regions along both sides of the floor plate.
TS15: neural tube floor plate Absent 4E

Specimen 5A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: gut Present 5A
TS21: skin Present Regionally restricted 5A Expression in hair and whisker follicles, in rings surrounding a central domain of Shh expression.
TS21: vibrissa follicle Present Regionally restricted 5A Expression in hair and whisker follicles, in rings surrounding a central domain of Shh expression.

Specimen 5C: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: gut mesenchyme Present 5C Authors state that expression in the gut is limited to mesoderm.
TS21: gut epithelium Absent 5C Authors state that expression in the gut is limited to mesoderm.

Specimen 5E: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: brain ventricular layer Present 5E Expression in the ventricular zone.
TS21: brain Present Regionally restricted 5E Expression in two lines flanking the zona limitans.

Specimen 9.5 dpc not shown: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: forelimb bud Present Regionally restricted Expression on the posterior edge of the forelimb bud.

Specimen 6A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forelimb bud Present Regionally restricted 6A Expression on posterior edge, stronger and broader than that seen at E9.5.
TS17: forelimb bud apical ectodermal ridge Absent 6A

Specimen 10.5 dpc not shown: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: hindlimb bud Weak Regionally restricted Low levels of expression at the posterior edge.
TS17: hindlimb bud apical ectodermal ridge Absent

Specimen 6C: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: forelimb bud Present Regionally restricted 6C Widespread expression in the posterior half.
TS18: forelimb bud apical ectodermal ridge Absent 6C

Specimen 6E: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: forelimb bud Present Regionally restricted 6E Expression fades in a distal domain near the edge of the limb bud.
TS19: handplate apical ectodermal ridge Absent 6E

Specimen 6G: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: hand mesenchyme Present Regionally restricted 6G Expression at the periphery of digital condensations.

Specimen E13.5 not shown: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: hand mesenchyme Present Regionally restricted

Specimen not shown: embryonic day 11.5-12.0 (more )
Structure Level Pattern Image Note
TS19: forelimb bud Present Regionally restricted Expression in the normal posterior domain, and in the proximal region of ectopic outgrowth.

Specimen 6I: embryonic day 11.5; Alx4lst/Alx4lst (more )
Structure Level Pattern Image Note
TS19: hindlimb bud Present Regionally restricted 6I Expression in the normal posterior domain, and in the proximal region of ectopic outgrowth, stronger in the hindlimb.

Specimen 6J: embryonic day 11.5; Alx4lst/Alx4lst (more )
Structure Level Pattern Image Note
TS19: hindlimb bud Present Regionally restricted 6J Expression in the normal posterior domain, and in the proximal region of ectopic outgrowth, stronger in the hindlimb.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/30/2025
MGI 6.24
The Jackson Laboratory