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H2af-ps1 Pseudogene Detail
Summary
  • Symbol
    H2af-ps1
  • Name
    H2A histone family, pseudogene 1
  • Synonyms
    Gm15652, H2af-ps
Location &
Maps
more
  • Sequence Map
    Chr5:36075241-36075535 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 19.06 cM
Strain
Comparison
more
  • SNPs within 2kb
    32 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3783096
 pseudogene Chr5:36075241-36075545 (+)
129S1/SvImJ MGP_129S1SvImJ_G0013057
 pseudogene Chr5:34230559-34230853 (+)
A/J MGP_AJ_G0013041
 pseudogene Chr5:33105847-33106152 (+)
AKR/J MGP_AKRJ_G0013008
 pseudogene Chr5:34366247-34366540 (+)
BALB/cJ MGP_BALBcJ_G0013021
 pseudogene Chr5:33619634-33619926 (+)
C3H/HeJ MGP_C3HHeJ_G0012872
 pseudogene Chr5:34378390-34378682 (+)
C57BL/6NJ MGP_C57BL6NJ_G0013380
 pseudogene Chr5:36128552-36128846 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0011578
 pseudogene Chr5:30861019-30861296 (+)
CAST/EiJ MGP_CASTEiJ_G0012604
 pseudogene Chr5:33484718-33485011 (+)
CBA/J MGP_CBAJ_G0012839
 pseudogene Chr5:36980336-36980634 (+)
DBA/2J MGP_DBA2J_G0012917
 pseudogene Chr5:33250755-33251050 (+)
FVB/NJ MGP_FVBNJ_G0012923
 pseudogene Chr5:32722953-32723248 (+)
LP/J MGP_LPJ_G0012990
 pseudogene Chr5:34658486-34658780 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0012941
 pseudogene Chr5:37761668-37761962 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0013382
 pseudogene Chr5:33869269-33869563 (+)
PWK/PhJ MGP_PWKPhJ_G0012423
 pseudogene Chr5:32419939-32420232 (+)
SPRET/EiJ MGP_SPRETEiJ_G0012224
 pseudogene Chr5:33334823-33335118 (+)
WSB/EiJ MGP_WSBEiJ_G0012641
 pseudogene Chr5:33927782-33928077 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (ENU)
    1
  • Chemically induced (other)
    2
  • Radiation induced
    3
  • Spontaneous
    1
  • Genomic Mutations
    7 involving H2af-ps1
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000082692 Ensembl Gene Model | MGI Sequence Detail 295 C57BL/6J ±  kb
transcript ENSMUST00000119066 Ensembl | MGI Sequence Detail 295 Not Applicable  
For the selected sequence
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 16
    Diseases 1
    Phenotypes 9
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:100332 Wilson L, et al., Random mutagenesis of proximal mouse chromosome 5 uncovers predominantly embryonic lethal mutations. Genome Res. 2005 Aug;15(8):1095-105
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory