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Lncenc1 Gene Detail
Summary
  • Symbol
    Lncenc1
  • Name
    long non-coding RNA, embryonic stem cells expressed 1
  • Synonyms
    Gm11019, Gm2373, linc-Enc1, Lincenc1, Platr18
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3780541
    NCBI Gene: 100039691
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:97571478-97634172 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 50.71 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    583 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3780541
 lncRNA gene Chr13:97571455-97645404 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005495
 lincRNA gene Chr13:99056551-99125264 (+)
A/J MGP_AJ_G0005481
 lincRNA gene Chr13:95303058-95364839 (+)
AKR/J MGP_AKRJ_G0005460
 lincRNA gene Chr13:98210894-98276460 (+)
BALB/cJ MGP_BALBcJ_G0005462
 lincRNA gene Chr13:95987606-96051178 (+)
C3H/HeJ MGP_C3HHeJ_G0005410
 lincRNA gene Chr13:97932457-98000300 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005618
 lincRNA gene Chr13:102041920-102108804 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004992
 lincRNA gene Chr13:91057805-91119394 (+)
CAST/EiJ MGP_CASTEiJ_G0005352
 lincRNA gene Chr13:97273300-97343454 (+)
CBA/J MGP_CBAJ_G0005399
 lincRNA gene Chr13:106123841-106194512 (+)
DBA/2J MGP_DBA2J_G0005415
 lincRNA gene Chr13:95054047-95119065 (+)
FVB/NJ MGP_FVBNJ_G0005441
 lincRNA gene Chr13:93826000-93888336 (+)
LP/J MGP_LPJ_G0005498
 lincRNA gene Chr13:99165814-99229973 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005424
 lincRNA gene Chr13:106448883-106513635 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005618
 lincRNA gene Chr13:97639426-97705082 (+)
PWK/PhJ MGP_PWKPhJ_G0005303
 lincRNA gene Chr13:93852381-93915111 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005222
 lincRNA gene Chr13:93915733-93984443 (+)
WSB/EiJ MGP_WSBEiJ_G0005402
 lincRNA gene Chr13:98096800-98163584 (+)



Homology
more
  • Human Ortholog
    LINC01157, long intergenic non-protein coding RNA 1157
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LINC01157, long intergenic non-protein coding RNA 1157
  • Synonyms
    linc-Enc1, Lncenc1
  • Links
    NCBI Gene ID: 105379037

  • Chr Location
    chr5:74258785-74321276 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotypes from 3 alleles in 3 genetic backgrounds
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit glucose intolerance and insulin resistance when fed standard chow but improved glucose tolerance and insulin sensitivity when fed a high-fat diet.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    720
  • Tissues
    14
  • cDNA Data
    14
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      43
    • RefSeq
      6
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 100039691 NCBI Gene Model | MGI Sequence Detail 62695 C57BL/6J ±  kb
    transcript NR_188726 RefSeq | MGI Sequence Detail 3338 C57BL/6  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 14
      cDNA 14
    Other
    Accession IDs
    less
    MGI:3779239
    References
    more
    • Summaries
      All 23
      Developmental Gene Expression 3
      Gene Ontology 1
      Phenotypes 15
    • Earliest
      J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
    • Latest
      J:339418 Han Y, et al., A proinflammatory long noncoding RNA Lncenc1 regulates inflammasome activation in macrophage. Am J Physiol Lung Cell Mol Physiol. 2023 May 1;324(5):L584-L595
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/30/2024
    MGI 6.23     		The Jackson Laboratory