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H2al2c Gene Detail
Summary
  • Symbol
    H2al2c
  • Name
    H2A histone family member L2C
  • Synonyms
    Gm6026
  • Feature Type
    protein coding gene
  • IDs
    MGI:3779546
    NCBI Gene: 547210
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    ChrY:2599099-2599434 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome Y, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3779546
 protein coding gene ChrY:2599099-2599434 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    H2AL3, H2A.L variant histone 3
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    H2AL3, H2A.L variant histone 3
  • Synonyms
    H2AL1RP, H2A.L.3
  • Links
    NCBI Gene ID: 115482686
    UniProt: A0A3B3IU63

  • Chr Location
    chrX:37994272-37994904 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 547210 NCBI Gene Model | MGI Sequence Detail 336 C57BL/6J ±  kb
transcript NM_001177569 RefSeq | MGI Sequence Detail 336 ZRU/MplStud  
polypeptide NP_001171040 RefSeq | MGI Sequence Detail 111 ZRU/MplStud  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR009072 Histone-fold
    IPR002119 Histone H2A
    IPR003958 Transcription factor CBF/NF-Y/archaeal histone domain
References
more
  • Summaries
    All 9
    Phenotypes 1
  • Earliest
    J:147461 Ferguson L, et al., Two novel mouse genes mapped to chromosome Yp are expressed specifically in spermatids. Mamm Genome. 2009 Apr;20(4):193-206
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory