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Snhg1 Gene Detail
Summary
  • Symbol
    Snhg1
  • Name
    small nucleolar RNA host gene 1
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3763743
    NCBI Gene: 83673
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:8700851-8703690 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 5.44 cM
Strain
Comparison
more
  • SNPs within 2kb
    15 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3763743
 lncRNA gene Chr19:8700801-8703811 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015380
 unclassified non-coding RNA gene Chr19:5991902-5994876 (+)
A/J MGP_AJ_G0015354
 unclassified non-coding RNA gene Chr19:5675185-5678139 (+)
AKR/J MGP_AKRJ_G0015318
 unclassified non-coding RNA gene Chr19:5761238-5764206 (+)
BALB/cJ MGP_BALBcJ_G0015318
 unclassified non-coding RNA gene Chr19:5777347-5780918 (+)
C3H/HeJ MGP_C3HHeJ_G0015142
 unclassified non-coding RNA gene Chr19:5844528-5847492 (+)
C57BL/6NJ MGP_C57BL6NJ_G0015772
 unclassified non-coding RNA gene Chr19:6112168-6115169 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013513
 unclassified non-coding RNA gene Chr19:5915731-5918673 (+)
CAST/EiJ MGP_CASTEiJ_G0014693
 unclassified non-coding RNA gene Chr19:5492331-5495300 (+)
CBA/J MGP_CBAJ_G0015121
 unclassified non-coding RNA gene Chr19:6224800-6227758 (+)
DBA/2J MGP_DBA2J_G0015216
 unclassified non-coding RNA gene Chr19:5505290-5508248 (+)
FVB/NJ MGP_FVBNJ_G0015223
 unclassified non-coding RNA gene Chr19:5580997-5583960 (+)
LP/J MGP_LPJ_G0015296
 unclassified non-coding RNA gene Chr19:5883077-5886603 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015249
 unclassified non-coding RNA gene Chr19:6100218-6103188 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0015811
 unclassified non-coding RNA gene Chr19:5804649-5807592 (+)
PWK/PhJ MGP_PWKPhJ_G0014483
 unclassified non-coding RNA gene Chr19:5170774-5173785 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014270
 unclassified non-coding RNA gene Chr19:5404365-5407280 (+)
WSB/EiJ MGP_WSBEiJ_G0014800
 unclassified non-coding RNA gene Chr19:5769728-5773566 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    748
  • Tissues
    38
  • cDNA Data
    85
  • Literature Summary
    4
Sequences &
Gene Models
less
  • All Sequences
    57
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 83673 NCBI Gene Model | MGI Sequence Detail 2840 C57BL/6J ±  kb
transcript NR_002896 RefSeq | MGI Sequence Detail 476 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 85
    cDNA 85

    Microarray probesets 7
References
more
  • Summaries
    All 21
    Developmental Gene Expression 4
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:49278 Tycowski KT, et al., A mammalian gene with introns instead of exons generating stable RNA products [see comments]. Nature. 1996 Feb 1;379(6564):464-6
  • Latest
    J:312381 Li M, et al., LncRNA Snhg1-driven self-reinforcing regulatory network promoted cardiac regeneration and repair after myocardial infarction. Theranostics. 2021;11(19):9397-9414
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory