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E330020D12Rik Gene Detail
Summary
  • Symbol
    E330020D12Rik
  • Name
    Riken cDNA E330020D12 gene
  • Synonyms
    Gm6648
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3761270
    NCBI Gene: 626058
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:153280573-153289981 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 65.35 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    135 from dbSNP Build 142
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3761270
 lncRNA gene Chr1:153279932-153289981 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0015092
 unclassified non-coding RNA gene Chr1:151840722-151853224 (-)
AKR/J MGP_AKRJ_G0015055
 unclassified non-coding RNA gene Chr1:156542602-156550892 (-)
BALB/cJ MGP_BALBcJ_G0015055
 unclassified non-coding RNA gene Chr1:152398218-152402197 (-)
C3H/HeJ MGP_C3HHeJ_G0014878
 unclassified non-coding RNA gene Chr1:156640224-156650184 (-)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0014857
 unclassified non-coding RNA gene Chr1:169443795-169452948 (-)
DBA/2J MGP_DBA2J_G0014950
 unclassified non-coding RNA gene Chr1:150861326-150870276 (-)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0014988
 unclassified non-coding RNA gene Chr1:177072640-177083294 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0015550
 unclassified non-coding RNA gene Chr1:156322059-156325711 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Gene trapped
    2
  • Genomic Mutations
    2 involving E330020D12Rik
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    4 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    733
  • Tissues
    17
  • cDNA Data
    13
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000073538 Ensembl Gene Model | MGI Sequence Detail 9409 C57BL/6J ±  kb
transcript ENSMUST00000186785 Ensembl | MGI Sequence Detail 1964 Not Applicable  
polypeptide Q3U3Z1 UniProt | EBI | MGI Sequence Detail 106 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 14
    cDNA 13
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:3647713
References
more
  • Summaries
    All 19
    Developmental Gene Expression 1
    Phenotypes 6
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory