Gm15420 MGI Mouse Gene Detail - MGI:3705302

Sequence Map

Chr17:27854317-27855842 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705302	lncRNA gene	Chr17:27854218-27855842 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003381	antisense lncRNA gene	Chr17:26955171-26956691 (+)
A/J	MGP_AJ_G0003357	antisense lncRNA gene	Chr17:26100900-26102416 (+)
AKR/J	MGP_AKRJ_G0003340	antisense lncRNA gene	Chr17:26263511-26265024 (+)
BALB/cJ	MGP_BALBcJ_G0003346	antisense lncRNA gene	Chr17:26373485-26374993 (+)
C3H/HeJ	MGP_C3HHeJ_G0003299	antisense lncRNA gene	Chr17:26636805-26638274 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003488	antisense lncRNA gene	Chr17:28067900-28072423 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003003	antisense lncRNA gene	Chr17:23485851-23487223 (+)
CAST/EiJ	MGP_CASTEiJ_G0003262	antisense lncRNA gene	Chr17:26598325-26599843 (+)
CBA/J	MGP_CBAJ_G0003295	antisense lncRNA gene	Chr17:29039664-29041382 (+)
DBA/2J	MGP_DBA2J_G0003301	antisense lncRNA gene	Chr17:25661168-25662690 (+)
FVB/NJ	MGP_FVBNJ_G0003319	antisense lncRNA gene	Chr17:25445999-25448073 (+)
LP/J	MGP_LPJ_G0003374	antisense lncRNA gene	Chr17:27221132-27222652 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003308	antisense lncRNA gene	Chr17:28526254-28531226 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003489	antisense lncRNA gene	Chr17:26680086-26681623 (+)
PWK/PhJ	MGP_PWKPhJ_G0003221	antisense lncRNA gene	Chr17:24451773-24453299 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003165	antisense lncRNA gene	Chr17:24678612-24680127 (+)
WSB/EiJ	MGP_WSBEiJ_G0003296	antisense lncRNA gene	Chr17:26660183-26661692 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000087387	Ensembl Gene Model \| MGI Sequence Detail	1526	C57BL/6J	± kb
	transcript	ENSMUST00000133274	Ensembl \| MGI Sequence Detail	388	Not Applicable

Summaries

All 12

Phenotypes 6
Earliest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
Latest

J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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