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Trav6-4 Gene Detail
Summary
  • Symbol
    Trav6-4
  • Name
    T cell receptor alpha variable 6-4
  • Synonyms
    Gm13945
Location &
Maps
more
  • Sequence Map
    Chr14:53691784-53692241 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.37 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    49 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3702153
 gene segment Chr14:53691753-53692241 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002553
 gene segment Chr14:47371376-47371864 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0002485
 gene segment Chr14:47244034-47244522 (+)
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0002209
 gene segment Chr14:31354940-31355428 (+)
CAST/EiJ MGP_CASTEiJ_G0002432
 gene segment Chr14:43937532-43938011 (+)
CBA/J MGP_CBAJ_G0002461
 gene segment Chr14:50369168-50369647 (+)
DBA/2J MGP_DBA2J_G0002470
 gene segment Chr14:45343252-45343731 (+)
FVB/NJ no annotation
LP/J MGP_LPJ_G0002546
 gene segment Chr14:48241494-48242069 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0002662
 gene segment Chr14:47291461-47291949 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002346
 gene segment Chr14:42619391-42619879 (+)
WSB/EiJ MGP_WSBEiJ_G0002464
 gene segment Chr14:46883237-46883716 (+)



Homology
more
  • Human Ortholog
    TRAV9-2, T cell receptor alpha variable 9-2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV9-2, T cell receptor alpha variable 9-2
  • Synonyms
    TCRAV22S1, TCRAV9S2, TRAV92
  • Links
    NCBI Gene ID: 28677
    UniProt: A0A087WT02

  • Chr Location
    14q11.2; chr14:21941128-21941657 (+)  GRCh38
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    18
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 100126463 NCBI Gene Model | MGI Sequence Detail 458 C57BL/6J ±  kb
polypeptide A0A075B6B4 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less

  • Microarray probesets 2
References
more
  • Summaries
    All 9
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory