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H3f5 Pseudogene Detail
Summary
  • Symbol
    H3f5
  • Name
    H3.5 histone
  • Synonyms
    Gm12657
Location &
Maps
more
  • Sequence Map
    Chr4:94487622-94488032 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 43.34 cM
Strain
Comparison
more
  • SNPs within 2kb
    89 from dbSNP Build 142
  • Strain Annotations
    21
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3651714
 pseudogene Chr4:94481887-94488556 (+)
129S1/SvImJ ENSMUSG00200010412
 pseudogene Chr4:89462789-89463199 (+)
A/J ENSMUSG00195009575
 pseudogene Chr4:90011894-90012304 (+)
AKR/J ENSMUSG00220020103
 pseudogene Chr4:89417107-89417517 (+)
BALB/cJ ENSMUSG00180006248
 pseudogene Chr4:88959220-88959630 (+)
C3H/HeJ ENSMUSG00175007959
 pseudogene Chr4:89898500-89898910 (+)
C57BL/6NJ ENSMUSG00215022236
 pseudogene Chr4:89855833-89856243 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005018939
 pseudogene Chr4:89293607-89293992 (+)
CBA/J ENSMUSG00210016663
 pseudogene Chr4:89475081-89475491 (+)
CBA/J ENSMUSG00210019494
 pseudogene Chr1:178217222-178217632 (+)
DBA/2J ENSMUSG00185002993
 pseudogene Chr4:90255572-90255982 (+)
FVB/NJ ENSMUSG00205014200
 pseudogene Chr4:88407889-88408299 (+)
FVB/NJ ENSMUSG00205012035
 protein coding gene Chr4:88407844-88408540 (+)
JF1/MsJ ENSUMUG00000003323
 pseudogene Chr4:90395765-90396150 (+)
LP/J ENSMUSG00230023565
 pseudogene Chr4:93573580-93573990 (+)
NOD/ShiLtJ ENSMUSG00190017668
 pseudogene Chr4:88913228-88913638 (+)
NZO/HlLtJ ENSMUSG00225003467
 pseudogene Chr4:98707704-98708114 (+)
PWK/PhJ ENSLUMG00010003578
 pseudogene Chr4:88141964-88142349 (+)
SPRET/EiJ ENSMSPG00010015460
 pseudogene Chr4:90169513-90169733 (+)
WSB/EiJ ENSIUOG00005029418
 pseudogene Chr13:45823069-45823479 (-)
WSB/EiJ ENSIUOG00005012873
 pseudogene Chr4:89266670-89267080 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000063314 Ensembl Gene Model | MGI Sequence Detail 411 C57BL/6J ±  kb
transcript ENSMUST00000119560 Ensembl | MGI Sequence Detail 411 Not Applicable  
polypeptide NP_001074488 RefSeq | MGI Sequence Detail 136 Not Specified  
For the selected sequence
Other
Accession IDs
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MGI:7484385
References
more
  • Summaries
    All 10
    Phenotypes 3
  • Earliest
    J:224673 Maehara K, et al., Tissue-specific expression of histone H3 variants diversified after species separation. Epigenetics Chromatin. 2015;8:35
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory