Chrna1os MGI Mouse Gene Detail - MGI:3651120 - cholinergic receptor nicotinic alpha 1 subunit, opposite strand

Sequence Map

Chr2:73415204-73419552 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651120	antisense lncRNA gene	Chr2:73415171-73419563 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003589	antisense lncRNA gene	Chr2:73872514-73878307 (+)
A/J	MGP_AJ_G0003571	antisense lncRNA gene	Chr2:70969786-70974178 (+)
AKR/J	MGP_AKRJ_G0003549	antisense lncRNA gene	Chr2:72917280-72921704 (+)
BALB/cJ	MGP_BALBcJ_G0003560	antisense lncRNA gene	Chr2:71159099-71163491 (+)
C3H/HeJ	MGP_C3HHeJ_G0003507	antisense lncRNA gene	Chr2:73102709-73107093 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003698	antisense lncRNA gene	Chr2:76068354-76074420 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003207	antisense lncRNA gene	Chr2:68400988-68405428 (+)
CAST/EiJ	MGP_CASTEiJ_G0003470	antisense lncRNA gene	Chr2:73381582-73387581 (+)
CBA/J	MGP_CBAJ_G0003504	antisense lncRNA gene	Chr2:78844223-78848620 (+)
DBA/2J	MGP_DBA2J_G0003512	antisense lncRNA gene	Chr2:70566317-70571152 (+)
FVB/NJ	MGP_FVBNJ_G0003532	antisense lncRNA gene	Chr2:69980767-69985102 (+)
LP/J	MGP_LPJ_G0003585	antisense lncRNA gene	Chr2:73743817-73748994 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003520	antisense lncRNA gene	Chr2:80763864-80768221 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003700	antisense lncRNA gene	Chr2:73005787-73010145 (+)
PWK/PhJ	MGP_PWKPhJ_G0003425	antisense lncRNA gene	Chr2:70494347-70499680 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003369	antisense lncRNA gene	Chr2:73241288-73245603 (+)
WSB/EiJ	no annotation

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	102633437	NCBI Gene Model \| MGI Sequence Detail	4349	C57BL/6J	± kb
	transcript	NR_153820	RefSeq \| MGI Sequence Detail	493	ZRU/MplStud

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MGI:5590423

Summaries

All 20

Phenotypes 13
Earliest

J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
Latest

J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729

TSS for Chrna1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18384	Chr2:73415179-73415235 (+)	3 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/16/2024 MGI 6.23