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Arid3c Gene Detail
Summary
  • Symbol
    Arid3c
  • Name
    AT-rich interaction domain 3C
  • Synonyms
    OTTMUSG00000006683
  • Feature Type
    protein coding gene
  • IDs
    MGI:3650624
    NCBI Gene: 550619
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:41723836-41731142 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 4, 22.01 cM
Strain
Comparison
more
  • SNPs within 2kb
    20 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650624
protein coding gene Chr4:41723830-41731226 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028170
protein coding gene Chr4:39689619-39696911 (-)
A/J MGP_AJ_G0028128
protein coding gene Chr4:38177433-38185013 (-)
AKR/J MGP_AKRJ_G0028091
protein coding gene Chr4:39168946-39176085 (-)
BALB/cJ MGP_BALBcJ_G0028141
protein coding gene Chr4:38522637-38530643 (-)
C3H/HeJ MGP_C3HHeJ_G0027879
protein coding gene Chr4:39759805-39769906 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028582
protein coding gene Chr4:41186070-41193619 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025921
protein coding gene Chr4:35824371-35828775 (-)
CAST/EiJ MGP_CASTEiJ_G0027324
protein coding gene Chr4:39405220-39412348 (-)
CBA/J MGP_CBAJ_G0027841
protein coding gene Chr4:42550561-42560972 (-)
DBA/2J MGP_DBA2J_G0027985
protein coding gene Chr4:38108197-38115326 (-)
FVB/NJ MGP_FVBNJ_G0027952
protein coding gene Chr4:37428104-37435223 (-)
LP/J MGP_LPJ_G0028093
protein coding gene Chr4:39779517-39788404 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027984
protein coding gene Chr4:45866940-45877146 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028640
protein coding gene Chr4:39280763-39287898 (-)
PWK/PhJ MGP_PWKPhJ_G0027043
protein coding gene Chr4:38145510-38153476 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026870
protein coding gene Chr4:39010229-39017377 (-)
WSB/EiJ MGP_WSBEiJ_G0027400
protein coding gene Chr4:39265926-39273724 (-)



Homology
more
  • Human Ortholog
    ARID3C, AT-rich interaction domain 3C
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ARID3C, AT-rich interaction domain 3C
  • Links
    NCBI Gene ID: 138715
    neXtProt AC: NX_A6NKF2
    UniProt: A6NKF2

  • Chr Location
    9p13.3; chr9:34621049-34633011 (-)  GRCh38

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000066224 Ensembl Gene Model | MGI Sequence Detail 7307 C57BL/6J ±  kb
transcript ENSMUST00000084698 Ensembl | MGI Sequence Detail 1417 Not Applicable  
polypeptide ENSMUSP00000081748 Ensembl | MGI Sequence Detail 409 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    Genomic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 20
    Gene Ontology 3
    Phenotypes 4
  • Earliest
    J:62745 Kortschak RD, et al., ARID proteins come in from the desert. Trends Biochem Sci. 2000 Jun;25(6):294-9
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/12/2024
MGI 6.23
The Jackson Laboratory