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H3f3c Gene Detail
Summary
  • Symbol
    H3f3c
  • Name
    H3 histone, family 3C
Location &
Maps
more
  • Sequence Map
    Chr2:119496107-119496517 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 59.97 cM
Strain
Comparison
more
  • SNPs within 2kb
    109 from dbSNP Build 142
  • Strain Annotations
    26
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650546
 protein coding gene Chr2:119495597-119496633 (-)
129S1/SvImJ ENSMUSG00200030079
 pseudogene Chr12:100453105-100453514 (+)
129S1/SvImJ ENSMUSG00200048482
 pseudogene Chr2:116443448-116443858 (-)
A/J ENSMUSG00195026269
 pseudogene Chr2:116489607-116490017 (-)
AKR/J ENSMUSG00220043121
 pseudogene Chr2:116412121-116412531 (-)
BALB/cJ ENSMUSG00180044193
 pseudogene Chr2:116289976-116290386 (-)
BALB/cJ ENSMUSG00180053346
 pseudogene Chr12:102216224-102216633 (+)
C3H/HeJ ENSMUSG00175028197
 pseudogene Chr2:116755198-116755608 (-)
C57BL/6NJ ENSMUSG00215033656
 pseudogene Chr2:116413501-116413911 (-)
C57BL/6NJ ENSMUSG00215023515
 protein coding gene Chr2:116413281-116414007 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005049316
 pseudogene Chr15:78499808-78500218 (-)
CAST/EiJ ENSTCUG00005019828
 pseudogene Chr17:51137426-51137836 (-)
CAST/EiJ ENSTCUG00005017063
 pseudogene Chr2:115694730-115695140 (-)
CAST/EiJ ENSTCUG00005035791
 pseudogene Chr5:102501259-102501669 (+)
CAST/EiJ ENSTCUG00005022010
 pseudogene Chr3:99054625-99055035 (-)
CBA/J ENSMUSG00210007717
 pseudogene Chr2:116596187-116596597 (-)
DBA/2J ENSMUSG00185049083
 pseudogene Chr2:116287695-116288105 (-)
DBA/2J ENSMUSG00185036157
 pseudogene Chr12:103673805-103674214 (+)
DBA/2J ENSMUSG00185038165
 pseudogene Chr1:182836623-182837033 (+)
FVB/NJ ENSMUSG00205042831
 pseudogene Chr2:115512895-115513305 (-)
JF1/MsJ ENSUMUG00000041377
 pseudogene Chr2:116162216-116162626 (-)
LP/J ENSMUSG00230023625
 pseudogene Chr2:118103117-118103527 (-)
LP/J ENSMUSG00230033048
 pseudogene Chr12:110718055-110718464 (+)
NOD/ShiLtJ ENSMUSG00190046136
 pseudogene Chr2:116524376-116524786 (-)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010048833
 pseudogene Chr2:116062759-116063156 (-)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005029163
 pseudogene Chr2:116251622-116252032 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving H3f3c
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    32
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000082029 Ensembl Gene Model | MGI Sequence Detail 411 C57BL/6J ±  kb
transcript ENSMUST00000119459 Ensembl | MGI Sequence Detail 411 Not Applicable  
polypeptide P02301 UniProt | EBI | MGI Sequence Detail 136 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • GlyGen
    P02301 1 site, 1 O-linked glycan (1 site)
References
more
  • Summaries
    All 18
    Gene Ontology 4
    Phenotypes 3
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:307963 Mrowiec K, et al., The periphilin 1-like BFAR isoform 3 is highly expressed in transcriptionally silent oocytes and involved in RNA metabolism. Biochim Biophys Acta Mol Cell Res. 2021 Sep;1868(10):119086
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory