Gm13580 MGI Mouse Gene Detail - MGI:3650460

Sequence Map

Chr2:60241869-60242918 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650460	lncRNA gene	Chr2:60241869-60242923 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003566	antisense lncRNA gene	Chr2:60007046-60008100 (+)
A/J	MGP_AJ_G0003546	antisense lncRNA gene	Chr2:57692954-57694008 (+)
AKR/J	MGP_AKRJ_G0003525	antisense lncRNA gene	Chr2:59281160-59282214 (+)
BALB/cJ	MGP_BALBcJ_G0003535	antisense lncRNA gene	Chr2:57807732-57808786 (+)
C3H/HeJ	MGP_C3HHeJ_G0003483	antisense lncRNA gene	Chr2:59376591-59377645 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003673	antisense lncRNA gene	Chr2:61767780-61768834 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003183	antisense lncRNA gene	Chr2:55267044-55268102 (+)
CAST/EiJ	MGP_CASTEiJ_G0003446	antisense lncRNA gene	Chr2:59419332-59420386 (+)
CBA/J	MGP_CBAJ_G0003480	antisense lncRNA gene	Chr2:64119906-64120960 (+)
DBA/2J	MGP_DBA2J_G0003488	antisense lncRNA gene	Chr2:57292130-57293184 (+)
FVB/NJ	MGP_FVBNJ_G0003507	antisense lncRNA gene	Chr2:56838823-56839877 (+)
LP/J	MGP_LPJ_G0003561	antisense lncRNA gene	Chr2:59851265-59852319 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003495	antisense lncRNA gene	Chr2:65731855-65732909 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003676	antisense lncRNA gene	Chr2:59314576-59315630 (+)
PWK/PhJ	MGP_PWKPhJ_G0003401	antisense lncRNA gene	Chr2:57151500-57152556 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003346	antisense lncRNA gene	Chr2:59372362-59373422 (+)
WSB/EiJ	MGP_WSBEiJ_G0003481	antisense lncRNA gene	Chr2:59594659-59595713 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	100039176	NCBI Gene Model \| MGI Sequence Detail	1050	C57BL/6J	± kb
	transcript	NR_046065	RefSeq \| MGI Sequence Detail	579	C57BL/6

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Summaries

All 12

Phenotypes 5
Earliest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
Latest

J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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