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Zkscan4 Gene Detail
Summary
  • Symbol
    Zkscan4
  • Name
    zinc finger with KRAB and SCAN domains 4
  • Feature Type
    protein coding gene
  • IDs
    MGI:3649412
    NCBI Gene: 544922
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr13:21663019-21669677 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 7.82 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    128 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649412
 protein coding gene Chr13:21663019-21669677 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020278
 protein coding gene Chr13:18743906-18751790 (+)
A/J MGP_AJ_G0020235
 protein coding gene Chr13:18334535-18341107 (+)
AKR/J MGP_AKRJ_G0020210
 protein coding gene Chr13:18639971-18647288 (+)
BALB/cJ MGP_BALBcJ_G0020223
 protein coding gene Chr13:18390318-18396892 (+)
C3H/HeJ MGP_C3HHeJ_G0020023
 protein coding gene Chr13:18731091-18737651 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020666
 protein coding gene Chr13:19411382-19418990 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018274
 protein coding gene Chr13:16681200-16687838 (+)
CAST/EiJ MGP_CASTEiJ_G0019561
 protein coding gene Chr13:18539400-18545973 (+)
CBA/J MGP_CBAJ_G0019987
 protein coding gene Chr13:20079721-20090829 (+)
DBA/2J MGP_DBA2J_G0020109
 protein coding gene Chr13:17972144-17979900 (+)
FVB/NJ MGP_FVBNJ_G0020090
 protein coding gene Chr13:17637770-17644440 (+)
LP/J MGP_LPJ_G0020179
 protein coding gene Chr13:18990154-19001809 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020128
 protein coding gene Chr13:20467118-20473706 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020694
 protein coding gene Chr13:18455217-18461744 (+)
PWK/PhJ MGP_PWKPhJ_G0019323
 protein coding gene Chr13:18018108-18026138 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019129
 protein coding gene Chr13:17468239-17474806 (+)
WSB/EiJ MGP_WSBEiJ_G0019618
 protein coding gene Chr13:18537537-18543010 (+)



Homology
more
  • Human Ortholog
    ZKSCAN4, zinc finger with KRAB and SCAN domains 4
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZKSCAN4, zinc finger with KRAB and SCAN domains 4
  • Synonyms
    P1P373C6, ZNF307, ZNF427, ZSCAN36
  • Links
    NCBI Gene ID: 387032
    neXtProt AC: NX_Q969J2
    UniProt: Q969J2

  • Chr Location
    6p22.1; chr6:28241697-28259211 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 544922 NCBI Gene Model | MGI Sequence Detail 6659 C57BL/6J ±  kb
transcript NM_001039115 RefSeq | MGI Sequence Detail 2471 C57BL/6  
polypeptide NP_001034204 RefSeq | MGI Sequence Detail 480 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    Genomic 1
    cDNA 3

    Microarray probesets 3
Other
Accession IDs
less
MGI:2145290
References
more
  • Summaries
    All 27
    Gene Ontology 2
    Phenotypes 9
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory