About   Help   FAQ
Trav12-3 Gene Detail
Summary
  • Symbol
    Trav12-3
  • Name
    T cell receptor alpha variable 12-3
  • Synonyms
    EG667790, Gm14498
  • Feature Type
    gene segment
  • IDs
    MGI:3648633
    NCBI Gene: 654836
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:53859209-53859702 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.44 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    68 from dbSNP Build 142
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648633
 gene segment Chr14:53859114-53859702 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002547
 gene segment Chr14:47188175-47188756 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002651
 gene segment Chr14:49935639-49936227 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002459
 gene segment Chr14:44260065-44262258 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0002514
 gene segment Chr14:45830779-45831338 (+)
LP/J MGP_LPJ_G0002559
 gene segment Chr14:48476225-48476824 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002489
 gene segment Chr14:50799772-50812309 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002631
 gene segment Chr14:46740118-47474129 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002370
 gene segment Chr14:43170686-43481779 (-)
WSB/EiJ MGP_WSBEiJ_G0002446
 gene segment Chr10:32562258-32565382 (+)



Homology
more
  • Human Ortholog
    TRAV18, T cell receptor alpha variable 18
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV18, T cell receptor alpha variable 18
  • Synonyms
    TCRAV18S1
  • Links
    NCBI Gene ID: 28665
    UniProt: A0A075B6X5

  • Chr Location
    14q11.2; chr14:22003106-22003673 (+)  GRCh38
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    16
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 654836 NCBI Gene Model | MGI Sequence Detail 494 C57BL/6J ±  kb
polypeptide A0A075B648 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 6
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory