About   Help   FAQ
Igkv2-116 Pseudogene Detail
Summary
  • Symbol
    Igkv2-116
  • Name
    immunoglobulin kappa variable 2-116
  • Feature Type
    pseudogenic gene segment
  • IDs
    MGI:3647785
    NCBI Gene: 434026
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:68128869-68129601 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 31.08 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    15 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3647785
 pseudogenic gene segment Chr6:68128869-68129601 (+)
129S1/SvImJ MGP_129S1SvImJ_G0000251
 pseudogenic gene segment Chr6:68483703-68484435 (+)
A/J MGP_AJ_G0000224
 pseudogenic gene segment Chr6:65579863-65580582 (+)
AKR/J MGP_AKRJ_G0000227
 pseudogenic gene segment Chr6:67544345-67545077 (+)
BALB/cJ MGP_BALBcJ_G0000222
 pseudogenic gene segment Chr6:65868419-65869151 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0000328
 pseudogenic gene segment Chr6:70107618-70108350 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0000222
 pseudogenic gene segment Chr6:67829651-67830381 (-)
CBA/J MGP_CBAJ_G0000213
 pseudogenic gene segment Chr6:72924850-72925582 (+)
DBA/2J no annotation
FVB/NJ no annotation
LP/J MGP_LPJ_G0000260
 pseudogenic gene segment Chr6:68202396-68203128 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0000308
 pseudogenic gene segment Chr6:67594952-67595723 (+)
PWK/PhJ MGP_PWKPhJ_G0000183
 pseudogenic gene segment Chr6:64164071-64164944 (+)
SPRET/EiJ MGP_SPRETEiJ_G0000169
 pseudogenic gene segment Chr6:67001707-67002438 (+)
WSB/EiJ MGP_WSBEiJ_G0000224
 pseudogenic gene segment Chr6:67712485-67713217 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    18
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 434026 NCBI Gene Model | MGI Sequence Detail 733 C57BL/6J ±  kb
transcript LC715420 GenBank | ENA | DDBJ | MGI Sequence Detail 558 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 6
  • Earliest
    J:32635 Lawler AM, et al., Early rearrangements of genes encoding murine immunoglobulin kappa chains, unlike genes encoding heavy chains, use variable gene segments dispersed throughout the locus. Proc Natl Acad Sci U S A. 1989 Sep;86(17):6744-8
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory