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Trav7-1 Gene Detail
Summary
  • Symbol
    Trav7-1
  • Name
    T cell receptor alpha variable 7-1
  • Synonyms
    Gm16452
  • Feature Type
    gene segment
  • IDs
    MGI:3647460
    NCBI Gene: 671652
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:52892274-52892785 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.03 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    35 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3647460
 gene segment Chr14:52892274-52892786 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002522
 gene segment Chr14:46713845-46714361 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002615
 gene segment Chr14:48783647-48784158 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002223
 gene segment Chr14:44597269-44597782 (+)
CAST/EiJ MGP_CASTEiJ_G0002435
 gene segment Chr14:44070223-44070752 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0002479
 gene segment Chr14:44829611-44830122 (+)
LP/J MGP_LPJ_G0002518
 gene segment Chr14:47339128-47339644 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002447
 gene segment Chr14:49719496-49720007 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002611
 gene segment Chr14:46484165-46484681 (+)
PWK/PhJ MGP_PWKPhJ_G0002426
 gene segment Chr14:42733615-42734144 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002354
 gene segment Chr14:43063948-43064477 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV12-3, T cell receptor alpha variable 12-3
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV12-3, T cell receptor alpha variable 12-3
  • Synonyms
    TCRAV12S3, TCRAV2S2, TRAV123
  • Links
    NCBI Gene ID: 28672
    UniProt: A0A0B4J271

  • Chr Location
    14q11.2; chr14:21965451-21966061 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    17
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000104620 Ensembl Gene Model | MGI Sequence Detail 512 C57BL/6J ±  kb
transcript ENSMUST00000198019 Ensembl | MGI Sequence Detail 337 Not Applicable  
polypeptide ENSMUSP00000142920 Ensembl | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 8
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory