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Pate9 Gene Detail
Summary
  • Symbol
    Pate9
  • Name
    prostate and testis expressed 9
  • Synonyms
    Gm5615
  • Feature Type
    protein coding gene
  • IDs
    MGI:3647347
    NCBI Gene: 434396
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:36443699-36453259 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 20.65 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    85 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3647347
 protein coding gene Chr9:36443693-36453259 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034550
 protein coding gene Chr9:34447105-34456666 (-)
A/J MGP_AJ_G0034529
 protein coding gene Chr9:33561535-33573792 (-)
AKR/J MGP_AKRJ_G0034456
 protein coding gene Chr9:34308561-34323949 (-)
BALB/cJ MGP_BALBcJ_G0034520
 protein coding gene Chr9:33420938-33432913 (-)
C3H/HeJ MGP_C3HHeJ_G0034233
 protein coding gene Chr9:34715603-34724093 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035042
 protein coding gene Chr9:35559911-35570356 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031969
 protein coding gene Chr9:31901043-31903672 (-)
CAST/EiJ MGP_CASTEiJ_G0033554
 protein coding gene Chr9:34435878-34448942 (-)
CBA/J MGP_CBAJ_G0034206
 protein coding gene Chr9:36797060-36812558 (-)
DBA/2J MGP_DBA2J_G0034364
 protein coding gene Chr9:33612257-33624396 (-)
FVB/NJ MGP_FVBNJ_G0034305
 protein coding gene Chr9:32869777-32882161 (-)
LP/J MGP_LPJ_G0034450
 protein coding gene Chr9:34741916-34750509 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034351
 protein coding gene Chr9:38451566-38477326 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035062
 protein coding gene Chr9:34266066-34275708 (-)
PWK/PhJ MGP_PWKPhJ_G0033260
 protein coding gene Chr9:33541637-33550804 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033094
 protein coding gene Chr9:34462213-34473235 (-)
WSB/EiJ MGP_WSBEiJ_G0033670
 protein coding gene Chr9:34046962-34054922 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 434396 NCBI Gene Model | MGI Sequence Detail 9561 C57BL/6J ±  kb
transcript NM_001033783 RefSeq | MGI Sequence Detail 2342 C57BL/6  
polypeptide NP_001028955 RefSeq | MGI Sequence Detail 101 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Phenotypes 4
  • Earliest
    J:138601 Levitin F, et al., PATE gene clusters code for multiple, secreted TFP/Ly-6/uPAR proteins that are expressed in reproductive and neuron-rich tissues and possess neuromodulatory activity. J Biol Chem. 2008 Jun 13;283(24):16928-39
  • Latest
    J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory