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Zscan4d Gene Detail
Summary
  • Symbol
    Zscan4d
  • Name
    zinc finger and SCAN domain containing 4D
  • Synonyms
    EG545913
  • Feature Type
    protein coding gene
  • IDs
    MGI:3645954
    NCBI Gene: 545913
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr7:10895570-10900075 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 6.86 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    65 from dbSNP Build 142
  • Strain Annotations
    3
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645954
 protein coding gene Chr7:10895301-10900086 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031632
 protein coding gene Chr7:8349509-8354700 (-)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0031403
 protein coding gene Chr7:8548510-8549408 (+)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    ZSCAN4, zinc finger and SCAN domain containing 4
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZSCAN4, zinc finger and SCAN domain containing 4
  • Synonyms
    ZNF494
  • Links
    NCBI Gene ID: 201516
    neXtProt AC: NX_Q8NAM6
    UniProt: Q8NAM6

  • Chr Location
    19q13.43; chr19:57651476-57679152 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    2
  • cDNA Data
    2
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 545913 NCBI Gene Model | MGI Sequence Detail 4506 C57BL/6J ±  kb
transcript NM_001100186 RefSeq | MGI Sequence Detail 1992 (C57BL/6J x DBA/2J)F1/J  
polypeptide A7KBS4 UniProt | EBI | MGI Sequence Detail 506 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    cDNA 2
    Primer pair 2
References
more
  • Summaries
    All 20
    Developmental Gene Expression 4
    Gene Ontology 4
  • Earliest
    J:120782 Falco G, et al., Zscan4: A novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells. Dev Biol. 2007 Jul 15;307(2):539-50
  • Latest
    J:330257 Smith R, et al., The H3.3 chaperone Hira complex orchestrates oocyte developmental competence. Development. 2022 Mar 1;149(5):dev200044
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory