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Lce3a Gene Detail
Summary
  • Symbol
    Lce3a
  • Name
    late cornified envelope 3A
  • Synonyms
    EG545548
  • Feature Type
    protein coding gene
  • IDs
    MGI:3645650
    NCBI Gene: 545548
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:92832594-92833537 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 40.14 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    34 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645650
 protein coding gene Chr3:92832591-92833553 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027522
 protein coding gene Chr3:93396597-93398456 (-)
A/J MGP_AJ_G0027489
 protein coding gene Chr3:90452288-90453952 (-)
AKR/J MGP_AKRJ_G0027454
 protein coding gene Chr3:92574421-92576367 (-)
BALB/cJ MGP_BALBcJ_G0027497
 protein coding gene Chr3:90263430-90264715 (-)
C3H/HeJ MGP_C3HHeJ_G0027235
 protein coding gene Chr3:92792280-92794601 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027939
 protein coding gene Chr3:96943346-96944289 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025288
 protein coding gene Chr3:87074406-87075383 (-)
CAST/EiJ MGP_CASTEiJ_G0026683
 protein coding gene Chr3:92218921-92219869 (-)
CBA/J MGP_CBAJ_G0027211
 protein coding gene Chr3:100266010-100266953 (-)
DBA/2J MGP_DBA2J_G0027348
 protein coding gene Chr3:89782068-89783011 (-)
FVB/NJ MGP_FVBNJ_G0027316
 protein coding gene Chr3:87940228-87941171 (-)
LP/J MGP_LPJ_G0027456
 protein coding gene Chr3:94609311-94610571 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027342
 protein coding gene Chr3:106563012-106563955 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027999
 protein coding gene Chr3:92315170-92318382 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0026765
 protein coding gene Chr3:92677920-92679355 (-)



Homology
more
  • Human Ortholog
    LCE3B, late cornified envelope 3B
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LCE3B, late cornified envelope 3B
  • Synonyms
    LEP14
  • Links
    NCBI Gene ID: 353143
    neXtProt AC: NX_Q5TA77
    UniProt: Q5TA77

  • Chr Location
    1q21.3; chr1:152613811-152614098 (+)  GRCh38
  • Human Ortholog
    LCE3C, late cornified envelope 3C
  • Synonyms
    LEP15, SPRL3A
  • Links
    NCBI Gene ID: 353144
    neXtProt AC: NX_Q5T5A8
    UniProt: Q5T5A8

  • Chr Location
    1q21.3; chr1:152600234-152601086 (+)  GRCh38
  • Human Ortholog
    LCE3D, late cornified envelope 3D
  • Synonyms
    LEP16, SPRL6A, SPRL6B
  • Links
    NCBI Gene ID: 84648
    neXtProt AC: NX_Q9BYE3
    UniProt: Q9BYE3

  • Chr Location
    1q21.3; chr1:152579381-152580516 (-)  GRCh38
  • Human Ortholog
    LCE3E, late cornified envelope 3E
  • Synonyms
    LEP17
  • Links
    NCBI Gene ID: 353145
    neXtProt AC: NX_Q5T5B0
    UniProt: Q5T5B0

  • Chr Location
    1q21.3; chr1:152565654-152566780 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000054325 Ensembl Gene Model | MGI Sequence Detail 944 C57BL/6J ±  kb
transcript ENSMUST00000067318 Ensembl | MGI Sequence Detail 549 Not Applicable  
polypeptide ENSMUSP00000066468 Ensembl | MGI Sequence Detail 98 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR028205 Late cornified envelope protein
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 3
References
more
  • Summaries
    All 20
    Developmental Gene Expression 2
    Diseases 1
    Phenotypes 6
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory