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BC048562 Gene Detail
Summary
  • Symbol
    BC048562
  • Name
    cDNA sequence BC048562
  • Feature Type
    protein coding gene
  • IDs
    MGI:3618861
    NCBI Gene: 434439
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:108313681-108323282 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 59.35 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    10 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3618861
 protein coding gene Chr9:108313681-108323285 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035297
 protein coding gene Chr9:110394186-110405207 (+)
A/J MGP_AJ_G0035276
 protein coding gene Chr9:106347208-106358596 (+)
AKR/J MGP_AKRJ_G0035208
 protein coding gene Chr9:109003458-109014782 (+)
BALB/cJ MGP_BALBcJ_G0035270
 protein coding gene Chr9:106046546-106055785 (+)
C3H/HeJ MGP_C3HHeJ_G0034980
 protein coding gene Chr9:109397245-109406829 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035790
 protein coding gene Chr9:113393307-113413684 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032688
 protein coding gene Chr9:103778085-103787465 (+)
CAST/EiJ MGP_CASTEiJ_G0034291
 protein coding gene Chr9:109371920-109383167 (+)
CBA/J MGP_CBAJ_G0034948
 protein coding gene Chr9:117397459-117407463 (+)
DBA/2J MGP_DBA2J_G0035109
 protein coding gene Chr9:105802886-105812739 (+)
FVB/NJ MGP_FVBNJ_G0035057
 protein coding gene Chr9:104569297-104578952 (+)
LP/J MGP_LPJ_G0035185
 protein coding gene Chr9:110589645-110600019 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035096
 protein coding gene Chr9:118967123-118990448 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035811
 protein coding gene Chr9:109292392-109302488 (+)
PWK/PhJ MGP_PWKPhJ_G0033998
 protein coding gene Chr9:106132092-106141967 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033833
 protein coding gene Chr9:109349019-109359986 (+)
WSB/EiJ MGP_WSBEiJ_G0034412
 protein coding gene Chr9:109177709-109189682 (+)



Homology
more
  • Human Ortholog
    C3orf84, chromosome 3 open reading frame 84
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C3orf84, chromosome 3 open reading frame 84
  • Links
    NCBI Gene ID: 646498
    neXtProt AC: NX_H3BNL1
    UniProt: H3BNL1

  • Chr Location
    3p21.31; chr3:49177634-49191858 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    2
  • cDNA Data
    6
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 434439 NCBI Gene Model | MGI Sequence Detail 9602 C57BL/6J ±  kb
transcript NM_001004192 RefSeq | MGI Sequence Detail 687 C57BL/6  
polypeptide NP_001004192 RefSeq | MGI Sequence Detail 204 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR029369 Domain of unknown function with conserved HDNR motif
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 21
    Developmental Gene Expression 1
    Phenotypes 6
  • Earliest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory